Hb_000134_100

Information

Type -
Description -
Location Contig134: 59178-64808
Sequence    

Annotation

kegg
ID pmum:103330548
description putative disease resistance protein RGA1
nr
ID XP_008231367.1
description PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
swissprot
ID -
description -
trembl
ID D7T357
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09596: 61741-62133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_100 0.0 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
2 Hb_002108_020 0.0725170584 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
3 Hb_012675_020 0.1002261646 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
4 Hb_001916_010 0.1027605075 - - hypothetical protein VITISV_021527 [Vitis vinifera]
5 Hb_004907_040 0.1337360092 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
6 Hb_002636_140 0.1445951751 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
7 Hb_122741_010 0.1781830911 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
8 Hb_022425_020 0.195855325 - - -
9 Hb_001208_020 0.2149271707 - - -
10 Hb_012539_090 0.2314813034 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
11 Hb_002534_140 0.2417794963 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
12 Hb_000156_150 0.2528184714 - - hypothetical protein JCGZ_04603 [Jatropha curcas]
13 Hb_001428_010 0.2580021321 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
14 Hb_158296_010 0.2588127207 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
15 Hb_007904_050 0.2594776634 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
16 Hb_000562_010 0.2630584339 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
17 Hb_009803_010 0.2673186313 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
18 Hb_011609_200 0.2676996818 - - PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
19 Hb_011316_140 0.2691596838 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
20 Hb_002909_030 0.2718858415 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]

Gene co-expression network

sample Hb_000134_100 Hb_000134_100 Hb_002108_020 Hb_002108_020 Hb_000134_100--Hb_002108_020 Hb_012675_020 Hb_012675_020 Hb_000134_100--Hb_012675_020 Hb_001916_010 Hb_001916_010 Hb_000134_100--Hb_001916_010 Hb_004907_040 Hb_004907_040 Hb_000134_100--Hb_004907_040 Hb_002636_140 Hb_002636_140 Hb_000134_100--Hb_002636_140 Hb_122741_010 Hb_122741_010 Hb_000134_100--Hb_122741_010 Hb_002108_020--Hb_002636_140 Hb_002108_020--Hb_012675_020 Hb_022425_020 Hb_022425_020 Hb_002108_020--Hb_022425_020 Hb_002108_020--Hb_001916_010 Hb_002108_020--Hb_004907_040 Hb_012675_020--Hb_002636_140 Hb_002534_140 Hb_002534_140 Hb_012675_020--Hb_002534_140 Hb_012675_020--Hb_022425_020 Hb_001689_060 Hb_001689_060 Hb_012675_020--Hb_001689_060 Hb_001916_010--Hb_004907_040 Hb_001916_010--Hb_122741_010 Hb_001916_010--Hb_012675_020 Hb_009803_010 Hb_009803_010 Hb_001916_010--Hb_009803_010 Hb_004907_040--Hb_122741_010 Hb_012539_090 Hb_012539_090 Hb_004907_040--Hb_012539_090 Hb_004907_040--Hb_012675_020 Hb_002636_140--Hb_022425_020 Hb_168451_010 Hb_168451_010 Hb_002636_140--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_002636_140--Hb_053224_010 Hb_122741_010--Hb_009803_010 Hb_010367_020 Hb_010367_020 Hb_122741_010--Hb_010367_020 Hb_158296_010 Hb_158296_010 Hb_122741_010--Hb_158296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.025314 0.0612761 0 0.0141204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis