Hb_000134_110

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig134: 68738-71356
Sequence    

Annotation

kegg
ID vvi:100263758
description putative disease resistance protein RGA4
nr
ID XP_010659407.1
description PREDICTED: putative disease resistance protein RGA4 [Vitis vinifera]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A061EYL3
description Leucine-rich repeat containing protein, putative OS=Theobroma cacao GN=TCM_025523 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09601: 68367-74028 , PASA_asmbl_09602: 68588-74028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_110 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Vitis vinifera]
2 Hb_005918_040 0.1354139488 - - hypothetical protein POPTR_0003s04560g [Populus trichocarpa]
3 Hb_000316_050 0.1437834222 - - enoyl-ACP reductase [Vernicia fordii]
4 Hb_032215_050 0.1441780325 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
5 Hb_000096_090 0.1462288522 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
6 Hb_002498_100 0.1465480468 - - bcr-associated protein, bap, putative [Ricinus communis]
7 Hb_010174_120 0.1530015248 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
8 Hb_006070_010 0.154484964 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
9 Hb_005463_020 0.1601641013 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
10 Hb_004659_120 0.1603450679 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
11 Hb_010483_020 0.1605124579 - - latex allergen [Hevea brasiliensis]
12 Hb_002903_090 0.1660318179 - - sugar transporter, putative [Ricinus communis]
13 Hb_007766_010 0.1664498458 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
14 Hb_002026_190 0.1671101696 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
15 Hb_004724_420 0.1678085005 - - fucose synthetase, putative [Ricinus communis]
16 Hb_003943_040 0.1697705214 - - DNA binding protein, putative [Ricinus communis]
17 Hb_000363_160 0.1725093275 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
18 Hb_002539_080 0.1725527256 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
19 Hb_135810_010 0.1732370375 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
20 Hb_000481_020 0.1733297911 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000134_110 Hb_000134_110 Hb_005918_040 Hb_005918_040 Hb_000134_110--Hb_005918_040 Hb_000316_050 Hb_000316_050 Hb_000134_110--Hb_000316_050 Hb_032215_050 Hb_032215_050 Hb_000134_110--Hb_032215_050 Hb_000096_090 Hb_000096_090 Hb_000134_110--Hb_000096_090 Hb_002498_100 Hb_002498_100 Hb_000134_110--Hb_002498_100 Hb_010174_120 Hb_010174_120 Hb_000134_110--Hb_010174_120 Hb_005918_040--Hb_002498_100 Hb_010402_010 Hb_010402_010 Hb_005918_040--Hb_010402_010 Hb_010174_130 Hb_010174_130 Hb_005918_040--Hb_010174_130 Hb_000029_030 Hb_000029_030 Hb_005918_040--Hb_000029_030 Hb_005918_040--Hb_010174_120 Hb_002182_040 Hb_002182_040 Hb_005918_040--Hb_002182_040 Hb_000316_050--Hb_000096_090 Hb_000236_070 Hb_000236_070 Hb_000316_050--Hb_000236_070 Hb_001959_070 Hb_001959_070 Hb_000316_050--Hb_001959_070 Hb_000648_110 Hb_000648_110 Hb_000316_050--Hb_000648_110 Hb_000505_010 Hb_000505_010 Hb_000316_050--Hb_000505_010 Hb_000023_140 Hb_000023_140 Hb_000316_050--Hb_000023_140 Hb_003943_040 Hb_003943_040 Hb_032215_050--Hb_003943_040 Hb_000080_190 Hb_000080_190 Hb_032215_050--Hb_000080_190 Hb_003206_070 Hb_003206_070 Hb_032215_050--Hb_003206_070 Hb_002903_090 Hb_002903_090 Hb_032215_050--Hb_002903_090 Hb_004724_420 Hb_004724_420 Hb_032215_050--Hb_004724_420 Hb_002687_110 Hb_002687_110 Hb_032215_050--Hb_002687_110 Hb_003376_040 Hb_003376_040 Hb_000096_090--Hb_003376_040 Hb_001396_180 Hb_001396_180 Hb_000096_090--Hb_001396_180 Hb_000096_090--Hb_000648_110 Hb_001053_180 Hb_001053_180 Hb_000096_090--Hb_001053_180 Hb_003732_020 Hb_003732_020 Hb_000096_090--Hb_003732_020 Hb_002498_100--Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_002498_100--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_002498_100--Hb_006693_030 Hb_000173_170 Hb_000173_170 Hb_002498_100--Hb_000173_170 Hb_002498_100--Hb_010402_010 Hb_007760_030 Hb_007760_030 Hb_002498_100--Hb_007760_030 Hb_000387_080 Hb_000387_080 Hb_010174_120--Hb_000387_080 Hb_000538_210 Hb_000538_210 Hb_010174_120--Hb_000538_210 Hb_001017_090 Hb_001017_090 Hb_010174_120--Hb_001017_090 Hb_010174_120--Hb_010402_010 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_120--Hb_010174_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7104 0.788468 1.76711 12.3667 10.5895 16.0398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2012 8.13036 24.5703 1.49044 5.56969

CAGE analysis