Hb_000134_250

Information

Type -
Description -
Location Contig134: 225536-227809
Sequence    

Annotation

kegg
ID rcu:RCOM_1526030
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002513185.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9FE79
description Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1
trembl
ID B9RHG6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1526030 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba4c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_250 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000994_020 0.0862352115 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
3 Hb_001373_160 0.0863540011 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
4 Hb_000260_770 0.0906258683 - - er lumen protein retaining receptor, putative [Ricinus communis]
5 Hb_009659_030 0.0956209663 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
6 Hb_006501_010 0.097785283 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
7 Hb_010287_030 0.0997119937 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002259_110 0.1047229313 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
9 Hb_075203_010 0.1069291968 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
10 Hb_033554_020 0.1105408255 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
11 Hb_004724_370 0.1114847144 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
12 Hb_001662_040 0.1138646444 - - DNA helicase, putative [Ricinus communis]
13 Hb_000139_220 0.1157879358 - - leucine rich repeat-containing protein, putative [Ricinus communis]
14 Hb_015026_100 0.1170665271 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
15 Hb_000940_050 0.1177649069 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
16 Hb_172257_010 0.1191946397 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
17 Hb_007413_040 0.1203020805 - - myo inositol monophosphatase, putative [Ricinus communis]
18 Hb_000371_010 0.1213606895 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
19 Hb_032823_020 0.1217353599 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004449_120 0.1222028929 - - PREDICTED: uncharacterized protein LOC105631291 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_250 Hb_000134_250 Hb_000994_020 Hb_000994_020 Hb_000134_250--Hb_000994_020 Hb_001373_160 Hb_001373_160 Hb_000134_250--Hb_001373_160 Hb_000260_770 Hb_000260_770 Hb_000134_250--Hb_000260_770 Hb_009659_030 Hb_009659_030 Hb_000134_250--Hb_009659_030 Hb_006501_010 Hb_006501_010 Hb_000134_250--Hb_006501_010 Hb_010287_030 Hb_010287_030 Hb_000134_250--Hb_010287_030 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_000994_020--Hb_000260_770 Hb_000994_020--Hb_006501_010 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_033554_020 Hb_033554_020 Hb_001373_160--Hb_033554_020 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_001373_160--Hb_010287_030 Hb_000260_770--Hb_012940_040 Hb_000139_320 Hb_000139_320 Hb_000260_770--Hb_000139_320 Hb_003470_040 Hb_003470_040 Hb_000260_770--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000260_770--Hb_004319_050 Hb_000260_770--Hb_004724_370 Hb_075203_010 Hb_075203_010 Hb_009659_030--Hb_075203_010 Hb_009659_030--Hb_000994_020 Hb_011344_070 Hb_011344_070 Hb_009659_030--Hb_011344_070 Hb_000940_050 Hb_000940_050 Hb_009659_030--Hb_000940_050 Hb_005833_030 Hb_005833_030 Hb_009659_030--Hb_005833_030 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_006501_010--Hb_015026_100 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040 Hb_010287_030--Hb_004724_370 Hb_010287_030--Hb_000302_170 Hb_008165_030 Hb_008165_030 Hb_010287_030--Hb_008165_030 Hb_001674_040 Hb_001674_040 Hb_010287_030--Hb_001674_040 Hb_030545_030 Hb_030545_030 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.673895 1.12702 2.05743 0.821186 0.850969 0.847069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.460323 0.253448 0.200905 1.3081 0.595709

CAGE analysis