Hb_000134_280

Information

Type -
Description -
Location Contig134: 244435-247431
Sequence    

Annotation

kegg
ID rcu:RCOM_1525400
description 23S rRNA methyltransferase, putative
nr
ID XP_012065530.1
description PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
swissprot
ID P74516
description Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0992 PE=3 SV=1
trembl
ID A0A067L4Q0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16733 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_280 0.0 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
2 Hb_003813_020 0.2153079506 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
3 Hb_027472_100 0.2164081082 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
4 Hb_000638_160 0.2296405005 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
5 Hb_001490_030 0.2296917153 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
6 Hb_003304_030 0.2305565708 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000627_300 0.2316707987 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
8 Hb_007534_050 0.239373368 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000622_240 0.2406429999 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
10 Hb_001889_010 0.2453314418 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
11 Hb_005489_090 0.2505941895 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
12 Hb_073490_020 0.2509246854 - - hypothetical protein PRUPE_ppa016333mg, partial [Prunus persica]
13 Hb_007426_170 0.2528990278 transcription factor TF Family: TCP -
14 Hb_005846_030 0.2534770765 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
15 Hb_001863_120 0.2542185741 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_000164_140 0.2545380866 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_005725_220 0.2552672792 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
18 Hb_000035_240 0.2560086837 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000110_230 0.256157902 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
20 Hb_014834_130 0.2574858004 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000134_280 Hb_000134_280 Hb_003813_020 Hb_003813_020 Hb_000134_280--Hb_003813_020 Hb_027472_100 Hb_027472_100 Hb_000134_280--Hb_027472_100 Hb_000638_160 Hb_000638_160 Hb_000134_280--Hb_000638_160 Hb_001490_030 Hb_001490_030 Hb_000134_280--Hb_001490_030 Hb_003304_030 Hb_003304_030 Hb_000134_280--Hb_003304_030 Hb_000627_300 Hb_000627_300 Hb_000134_280--Hb_000627_300 Hb_001790_030 Hb_001790_030 Hb_003813_020--Hb_001790_030 Hb_007534_050 Hb_007534_050 Hb_003813_020--Hb_007534_050 Hb_000112_060 Hb_000112_060 Hb_003813_020--Hb_000112_060 Hb_000164_140 Hb_000164_140 Hb_003813_020--Hb_000164_140 Hb_001946_160 Hb_001946_160 Hb_003813_020--Hb_001946_160 Hb_158845_050 Hb_158845_050 Hb_003813_020--Hb_158845_050 Hb_001863_120 Hb_001863_120 Hb_027472_100--Hb_001863_120 Hb_003038_100 Hb_003038_100 Hb_027472_100--Hb_003038_100 Hb_027472_100--Hb_001946_160 Hb_027472_100--Hb_003813_020 Hb_021650_040 Hb_021650_040 Hb_027472_100--Hb_021650_040 Hb_009252_060 Hb_009252_060 Hb_027472_100--Hb_009252_060 Hb_000167_050 Hb_000167_050 Hb_000638_160--Hb_000167_050 Hb_005846_030 Hb_005846_030 Hb_000638_160--Hb_005846_030 Hb_014834_130 Hb_014834_130 Hb_000638_160--Hb_014834_130 Hb_011689_120 Hb_011689_120 Hb_000638_160--Hb_011689_120 Hb_000622_240 Hb_000622_240 Hb_000638_160--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000638_160--Hb_000462_090 Hb_001490_030--Hb_003813_020 Hb_001490_030--Hb_000622_240 Hb_001712_020 Hb_001712_020 Hb_001490_030--Hb_001712_020 Hb_000107_570 Hb_000107_570 Hb_001490_030--Hb_000107_570 Hb_004241_020 Hb_004241_020 Hb_001490_030--Hb_004241_020 Hb_000156_210 Hb_000156_210 Hb_001490_030--Hb_000156_210 Hb_025194_060 Hb_025194_060 Hb_003304_030--Hb_025194_060 Hb_011310_140 Hb_011310_140 Hb_003304_030--Hb_011310_140 Hb_003304_030--Hb_021650_040 Hb_003304_030--Hb_001946_160 Hb_005127_030 Hb_005127_030 Hb_003304_030--Hb_005127_030 Hb_000976_190 Hb_000976_190 Hb_003304_030--Hb_000976_190 Hb_001124_180 Hb_001124_180 Hb_000627_300--Hb_001124_180 Hb_000176_010 Hb_000176_010 Hb_000627_300--Hb_000176_010 Hb_005489_090 Hb_005489_090 Hb_000627_300--Hb_005489_090 Hb_002374_300 Hb_002374_300 Hb_000627_300--Hb_002374_300 Hb_002150_130 Hb_002150_130 Hb_000627_300--Hb_002150_130 Hb_000627_300--Hb_005846_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030784 0 0.262238 0.0263229 0 0.114075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.141793 0.167228 0.100481 0.0677771 0.334418

CAGE analysis