Hb_000134_300

Information

Type -
Description -
Location Contig134: 263401-264498
Sequence    

Annotation

kegg
ID rcu:RCOM_1525390
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002513181.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9RHG2
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1525390 PE=4 SV=1
Gene Ontology
ID GO:0009507
description dna-damage-repair toleration protein drt100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09621: 263196-264879
cDNA
(Sanger)
(ID:Location)		 006_J16.ab1: 263196-263935 , 051_H14.ab1: 263196-263774

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_300 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000802_070 0.0357311732 - - PREDICTED: LOW QUALITY PROTEIN: eugenol synthase 1-like [Jatropha curcas]
3 Hb_000059_190 0.0674417599 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
4 Hb_003680_180 0.0702224966 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_034420_010 0.0777394664 - - glutathione S-transferase [Caragana korshinskii]
6 Hb_002790_010 0.0778226329 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_004774_080 0.0879629165 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006573_310 0.1056242925 - - Tellurite resistance protein tehA, putative [Ricinus communis]
9 Hb_000394_120 0.1103939862 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
10 Hb_003185_040 0.1161592217 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
11 Hb_001257_070 0.1206889104 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
12 Hb_000162_160 0.1223540427 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
13 Hb_000010_430 0.1229816504 - - Esterase precursor, putative [Ricinus communis]
14 Hb_056196_020 0.1237929014 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
15 Hb_000375_100 0.1246840673 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
16 Hb_003006_070 0.1247789634 - - aquaporin [Manihot esculenta]
17 Hb_057575_010 0.1271845841 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000175_080 0.1278165443 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
19 Hb_007760_060 0.1289231508 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
20 Hb_000675_130 0.1303157863 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_300 Hb_000134_300 Hb_000802_070 Hb_000802_070 Hb_000134_300--Hb_000802_070 Hb_000059_190 Hb_000059_190 Hb_000134_300--Hb_000059_190 Hb_003680_180 Hb_003680_180 Hb_000134_300--Hb_003680_180 Hb_034420_010 Hb_034420_010 Hb_000134_300--Hb_034420_010 Hb_002790_010 Hb_002790_010 Hb_000134_300--Hb_002790_010 Hb_004774_080 Hb_004774_080 Hb_000134_300--Hb_004774_080 Hb_000802_070--Hb_000059_190 Hb_000802_070--Hb_003680_180 Hb_000802_070--Hb_002790_010 Hb_000802_070--Hb_034420_010 Hb_000010_430 Hb_000010_430 Hb_000802_070--Hb_000010_430 Hb_000059_190--Hb_003680_180 Hb_003185_040 Hb_003185_040 Hb_000059_190--Hb_003185_040 Hb_000175_080 Hb_000175_080 Hb_000059_190--Hb_000175_080 Hb_000336_010 Hb_000336_010 Hb_000059_190--Hb_000336_010 Hb_003680_180--Hb_002790_010 Hb_003680_180--Hb_000175_080 Hb_001123_330 Hb_001123_330 Hb_003680_180--Hb_001123_330 Hb_001257_070 Hb_001257_070 Hb_034420_010--Hb_001257_070 Hb_012395_040 Hb_012395_040 Hb_034420_010--Hb_012395_040 Hb_000671_020 Hb_000671_020 Hb_034420_010--Hb_000671_020 Hb_000394_120 Hb_000394_120 Hb_034420_010--Hb_000394_120 Hb_006469_100 Hb_006469_100 Hb_002790_010--Hb_006469_100 Hb_141016_010 Hb_141016_010 Hb_002790_010--Hb_141016_010 Hb_000574_060 Hb_000574_060 Hb_002790_010--Hb_000574_060 Hb_027802_030 Hb_027802_030 Hb_002790_010--Hb_027802_030 Hb_004375_090 Hb_004375_090 Hb_002790_010--Hb_004375_090 Hb_006573_310 Hb_006573_310 Hb_004774_080--Hb_006573_310 Hb_118282_020 Hb_118282_020 Hb_004774_080--Hb_118282_020 Hb_004774_080--Hb_003680_180 Hb_004774_080--Hb_034420_010 Hb_000527_020 Hb_000527_020 Hb_004774_080--Hb_000527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.131693 70.3691 44.5909 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.114045 4.3148

CAGE analysis