Hb_000134_310

Information

Type -
Description -
Location Contig134: 272661-275709
Sequence    

Annotation

kegg
ID rcu:RCOM_1525380
description retinoblastoma binding protein, putative
nr
ID XP_012065532.1
description PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZRT1
description Protein gamma response 1 OS=Arabidopsis thaliana GN=GR1 PE=1 SV=2
trembl
ID A0A067L873
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16735 PE=4 SV=1
Gene Ontology
ID GO:0000014
description protein gamma response 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09623: 274314-274467 , PASA_asmbl_09626: 276453-278297
cDNA
(Sanger)
(ID:Location)		 005_I08.ab1: 276459-278295 , 021_B19.ab1: 276501-278297 , 021_G24.ab1: 276485-278293 , 050_H20.ab1: 276497-278297

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_310 0.0 - - PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]
2 Hb_003440_060 0.0960756056 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
3 Hb_000665_160 0.1006470803 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
4 Hb_006117_040 0.1067562691 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
5 Hb_002893_070 0.1075010509 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
6 Hb_000723_100 0.1138754961 - - phosphoglycerate kinase, putative [Ricinus communis]
7 Hb_000080_120 0.114199555 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
8 Hb_023278_010 0.1155558172 - - Chaperone protein DnaJ [Glycine soja]
9 Hb_006915_070 0.1163504247 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
10 Hb_004951_070 0.1169820854 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
11 Hb_000076_130 0.117202275 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
12 Hb_000866_470 0.1199301751 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
13 Hb_000948_170 0.1205950675 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
14 Hb_000753_200 0.1207184359 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
15 Hb_001489_050 0.1238360125 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
16 Hb_000540_150 0.1241871187 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
17 Hb_000740_050 0.1245087416 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
18 Hb_035755_010 0.1258438313 - - unknown [Populus trichocarpa]
19 Hb_000367_130 0.1266470389 - - conserved hypothetical protein [Ricinus communis]
20 Hb_153533_010 0.1270479129 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_310 Hb_000134_310 Hb_003440_060 Hb_003440_060 Hb_000134_310--Hb_003440_060 Hb_000665_160 Hb_000665_160 Hb_000134_310--Hb_000665_160 Hb_006117_040 Hb_006117_040 Hb_000134_310--Hb_006117_040 Hb_002893_070 Hb_002893_070 Hb_000134_310--Hb_002893_070 Hb_000723_100 Hb_000723_100 Hb_000134_310--Hb_000723_100 Hb_000080_120 Hb_000080_120 Hb_000134_310--Hb_000080_120 Hb_003440_060--Hb_002893_070 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_003440_060--Hb_000723_100 Hb_004032_410 Hb_004032_410 Hb_003440_060--Hb_004032_410 Hb_004310_140 Hb_004310_140 Hb_003440_060--Hb_004310_140 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050 Hb_000076_130 Hb_000076_130 Hb_000665_160--Hb_000076_130 Hb_000544_010 Hb_000544_010 Hb_000665_160--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000665_160--Hb_002909_050 Hb_000107_400 Hb_000107_400 Hb_000665_160--Hb_000107_400 Hb_007007_060 Hb_007007_060 Hb_000665_160--Hb_007007_060 Hb_000665_160--Hb_002893_070 Hb_002163_040 Hb_002163_040 Hb_006117_040--Hb_002163_040 Hb_006117_040--Hb_000080_120 Hb_006117_040--Hb_002893_070 Hb_021346_030 Hb_021346_030 Hb_006117_040--Hb_021346_030 Hb_000224_160 Hb_000224_160 Hb_006117_040--Hb_000224_160 Hb_002893_070--Hb_000080_120 Hb_022693_140 Hb_022693_140 Hb_002893_070--Hb_022693_140 Hb_002893_070--Hb_000224_160 Hb_002893_070--Hb_000723_100 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050 Hb_000723_100--Hb_004310_140 Hb_000723_100--Hb_000665_160 Hb_000740_050 Hb_000740_050 Hb_000723_100--Hb_000740_050 Hb_000061_020 Hb_000061_020 Hb_000723_100--Hb_000061_020 Hb_000080_120--Hb_002163_040 Hb_000804_040 Hb_000804_040 Hb_000080_120--Hb_000804_040 Hb_000080_120--Hb_000224_160 Hb_000080_120--Hb_000076_130 Hb_012022_150 Hb_012022_150 Hb_000080_120--Hb_012022_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45446 1.10415 2.06597 0.719764 3.44055 3.67567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51362 1.80878 0.834437 1.23023 3.29093

CAGE analysis