Hb_000134_330

Information

Type -
Description -
Location Contig134: 278516-282074
Sequence    

Annotation

kegg
ID pda:103711374
description U6 snRNA-associated Sm-like protein LSm7
nr
ID XP_010928862.1
description PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
swissprot
ID Q9SI54
description Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1
trembl
ID A0A061DVC4
description Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_005909 PE=4 SV=1
Gene Ontology
ID GO:0005732
description u6 snrna-associated sm-like protein lsm7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09625: 276457-278297 , PASA_asmbl_09627: 278525-282159
cDNA
(Sanger)
(ID:Location)		 021_B19r.ab1: 276501-278297

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_330 0.0 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
2 Hb_001268_140 0.0581274409 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000025_600 0.0615672282 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
4 Hb_002296_060 0.0632841799 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
5 Hb_001300_270 0.0647981661 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
6 Hb_000099_060 0.0680824967 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
7 Hb_008173_090 0.0685181925 - - glutathione peroxidase, putative [Ricinus communis]
8 Hb_005701_020 0.0711656527 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
9 Hb_002918_200 0.0725359044 - - -
10 Hb_003376_030 0.0743571898 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
11 Hb_000970_010 0.0749844524 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
12 Hb_155764_020 0.0750595395 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
13 Hb_004108_230 0.0793240401 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
14 Hb_010172_070 0.0799288531 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
15 Hb_089140_100 0.0801825213 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
16 Hb_001818_020 0.0815857001 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
17 Hb_011465_040 0.0822247634 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
18 Hb_007479_020 0.0828099667 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
19 Hb_001383_060 0.0831245076 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
20 Hb_007741_050 0.0842959823 - - vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000134_330 Hb_000134_330 Hb_001268_140 Hb_001268_140 Hb_000134_330--Hb_001268_140 Hb_000025_600 Hb_000025_600 Hb_000134_330--Hb_000025_600 Hb_002296_060 Hb_002296_060 Hb_000134_330--Hb_002296_060 Hb_001300_270 Hb_001300_270 Hb_000134_330--Hb_001300_270 Hb_000099_060 Hb_000099_060 Hb_000134_330--Hb_000099_060 Hb_008173_090 Hb_008173_090 Hb_000134_330--Hb_008173_090 Hb_001268_140--Hb_001300_270 Hb_007944_040 Hb_007944_040 Hb_001268_140--Hb_007944_040 Hb_001045_080 Hb_001045_080 Hb_001268_140--Hb_001045_080 Hb_155764_020 Hb_155764_020 Hb_001268_140--Hb_155764_020 Hb_001269_270 Hb_001269_270 Hb_001268_140--Hb_001269_270 Hb_000025_600--Hb_002296_060 Hb_001818_020 Hb_001818_020 Hb_000025_600--Hb_001818_020 Hb_000025_600--Hb_001268_140 Hb_005701_020 Hb_005701_020 Hb_000025_600--Hb_005701_020 Hb_000025_600--Hb_001300_270 Hb_002296_060--Hb_005701_020 Hb_002296_060--Hb_001818_020 Hb_000970_010 Hb_000970_010 Hb_002296_060--Hb_000970_010 Hb_002296_060--Hb_001300_270 Hb_001300_270--Hb_007944_040 Hb_001300_270--Hb_155764_020 Hb_000111_340 Hb_000111_340 Hb_001300_270--Hb_000111_340 Hb_002182_060 Hb_002182_060 Hb_000099_060--Hb_002182_060 Hb_000099_060--Hb_008173_090 Hb_000099_060--Hb_155764_020 Hb_000099_060--Hb_000970_010 Hb_000099_060--Hb_001269_270 Hb_001235_190 Hb_001235_190 Hb_008173_090--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_008173_090--Hb_000970_010 Hb_008173_090--Hb_002182_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.172 22.9263 32.0945 19.7427 63.3596 57.5034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.835 183.904 94.0903 38.2 20.3475

CAGE analysis