Hb_000134_350

Information

Type -
Description -
Location Contig134: 291314-295014
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012373mg
description hypothetical protein
nr
ID XP_012065537.1
description PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
swissprot
ID A3BDI8
description Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1
trembl
ID A0A067L4U9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16739 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger a20 and an1 domain-containing stress-associated protein 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09629: 291352-294897 , PASA_asmbl_09630: 294046-294609 , PASA_asmbl_09633: 292486-292899
cDNA
(Sanger)
(ID:Location)		 006_E21.ab1: 291611-294867 , 048_G18.ab1: 291584-294873

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_350 0.0 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
2 Hb_000138_040 0.0806995238 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
3 Hb_007943_080 0.0887383061 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
4 Hb_000358_080 0.0925581338 - - Ribonuclease 3 [Gossypium arboreum]
5 Hb_003861_080 0.0960642632 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
6 Hb_009382_020 0.1051809741 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
7 Hb_000661_170 0.1124816459 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
8 Hb_000088_010 0.113787155 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000120_050 0.1150893613 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
10 Hb_000300_620 0.1152339848 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
11 Hb_000805_090 0.1159763827 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
12 Hb_002903_110 0.1185130323 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
13 Hb_003747_240 0.1226482809 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
14 Hb_004046_010 0.1251522528 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
15 Hb_001635_100 0.1268114479 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
16 Hb_001274_020 0.1270406102 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
17 Hb_003581_140 0.1287994973 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
18 Hb_000490_030 0.128873104 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
19 Hb_002740_130 0.1290859746 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
20 Hb_000619_080 0.1312760892 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_350 Hb_000134_350 Hb_000138_040 Hb_000138_040 Hb_000134_350--Hb_000138_040 Hb_007943_080 Hb_007943_080 Hb_000134_350--Hb_007943_080 Hb_000358_080 Hb_000358_080 Hb_000134_350--Hb_000358_080 Hb_003861_080 Hb_003861_080 Hb_000134_350--Hb_003861_080 Hb_009382_020 Hb_009382_020 Hb_000134_350--Hb_009382_020 Hb_000661_170 Hb_000661_170 Hb_000134_350--Hb_000661_170 Hb_001817_180 Hb_001817_180 Hb_000138_040--Hb_001817_180 Hb_000138_040--Hb_000358_080 Hb_000138_040--Hb_009382_020 Hb_029281_010 Hb_029281_010 Hb_000138_040--Hb_029281_010 Hb_001274_020 Hb_001274_020 Hb_000138_040--Hb_001274_020 Hb_007943_080--Hb_000358_080 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_007943_080--Hb_007558_140 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_004046_010 Hb_004046_010 Hb_003861_080--Hb_004046_010 Hb_000110_160 Hb_000110_160 Hb_003861_080--Hb_000110_160 Hb_001635_100 Hb_001635_100 Hb_003861_080--Hb_001635_100 Hb_000805_090 Hb_000805_090 Hb_003861_080--Hb_000805_090 Hb_001157_030 Hb_001157_030 Hb_003861_080--Hb_001157_030 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_000446_090 Hb_000446_090 Hb_000661_170--Hb_000446_090 Hb_000661_170--Hb_004046_010 Hb_000661_170--Hb_009382_020 Hb_000051_110 Hb_000051_110 Hb_000661_170--Hb_000051_110 Hb_000661_170--Hb_007943_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
920.121 359.401 56.9716 58.2356 603.555 669.978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
580.495 300.319 1001.77 349.001 58.1036

CAGE analysis