Hb_000134_360

Information

Type -
Description -
Location Contig134: 297875-306399
Sequence    

Annotation

kegg
ID vvi:100855398
description uncharacterized LOC100855398
nr
ID XP_012065541.1
description PREDICTED: protein gar2 [Jatropha curcas]
swissprot
ID Q9DDY9
description Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1
trembl
ID A0A067L878
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16740 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna recognition motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09634: 297952-306435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_360 0.0 - - PREDICTED: protein gar2 [Jatropha curcas]
2 Hb_000631_150 0.0592879381 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
3 Hb_001486_120 0.0658742296 - - PREDICTED: importin-5-like [Jatropha curcas]
4 Hb_008528_010 0.0665195434 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
5 Hb_000003_790 0.0692872865 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
6 Hb_005000_270 0.071579679 - - unnamed protein product [Vitis vinifera]
7 Hb_000849_100 0.0725959292 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
8 Hb_000317_440 0.0731312503 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
9 Hb_000573_040 0.0734716764 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
10 Hb_000684_180 0.0781810182 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
11 Hb_000372_040 0.0790942643 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000318_140 0.0792196263 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
13 Hb_001582_030 0.0818653745 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
14 Hb_000165_130 0.0842929254 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
15 Hb_000291_120 0.085049075 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
16 Hb_079326_010 0.0854252724 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
17 Hb_000136_150 0.0871107542 - - hypothetical protein VITISV_038366 [Vitis vinifera]
18 Hb_000212_280 0.0874944284 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
19 Hb_002025_140 0.0892109785 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_004881_050 0.089246581 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_360 Hb_000134_360 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_008528_010 Hb_008528_010 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100 Hb_000317_440 Hb_000317_440 Hb_000631_150--Hb_000317_440 Hb_000631_150--Hb_000849_100 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_000318_140 Hb_000318_140 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_000136_150 Hb_000136_150 Hb_001486_120--Hb_000136_150 Hb_000805_310 Hb_000805_310 Hb_001486_120--Hb_000805_310 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_001486_120--Hb_008528_010 Hb_008528_010--Hb_000003_790 Hb_001582_030 Hb_001582_030 Hb_008528_010--Hb_001582_030 Hb_022288_010 Hb_022288_010 Hb_008528_010--Hb_022288_010 Hb_012016_020 Hb_012016_020 Hb_008528_010--Hb_012016_020 Hb_000003_790--Hb_000317_440 Hb_001975_020 Hb_001975_020 Hb_000003_790--Hb_001975_020 Hb_002235_320 Hb_002235_320 Hb_000003_790--Hb_002235_320 Hb_002725_070 Hb_002725_070 Hb_000003_790--Hb_002725_070 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_000212_280 Hb_000212_280 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_006002_030 Hb_006002_030 Hb_000849_100--Hb_006002_030 Hb_000849_100--Hb_003716_020 Hb_000849_100--Hb_002725_070 Hb_000849_100--Hb_002235_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.7629 25.7163 9.35967 15.55 99.4532 108.392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3857 15.1353 26.9404 19.8911 16.5821

CAGE analysis