Hb_000135_040

Information

Type -
Description -
Location Contig135: 90622-91723
Sequence    

Annotation

kegg
ID sot:102585642
description uncharacterized LOC102585642
nr
ID XP_012069258.1
description PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
swissprot
ID Q9FGQ3
description F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1
trembl
ID A5C192
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000135_040 0.0 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
2 Hb_008953_020 0.000192038 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
3 Hb_008221_010 0.0051133431 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
4 Hb_001817_070 0.0076337745 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_013654_020 0.0087498779 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
6 Hb_048653_010 0.0088921524 - - PREDICTED: mavicyanin [Jatropha curcas]
7 Hb_042239_010 0.0101547982 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
8 Hb_154646_010 0.0105351217 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000370_050 0.0144328171 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_003702_020 0.0144683474 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
11 Hb_008092_010 0.014912185 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
12 Hb_007592_010 0.0170585702 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
13 Hb_005426_010 0.017212741 - - polyprotein [Oryza australiensis]
14 Hb_002342_040 0.02759684 - - FERONIA, partial [Arabis alpina]
15 Hb_000238_010 0.0279836223 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002154_090 0.0299456679 - - -
17 Hb_122911_010 0.034797131 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
18 Hb_000045_270 0.0404800796 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010452_030 0.043170089 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
20 Hb_039814_010 0.043653667 - - hypothetical protein JCGZ_05023 [Jatropha curcas]

Gene co-expression network

sample Hb_000135_040 Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_000135_040--Hb_008953_020 Hb_008221_010 Hb_008221_010 Hb_000135_040--Hb_008221_010 Hb_001817_070 Hb_001817_070 Hb_000135_040--Hb_001817_070 Hb_013654_020 Hb_013654_020 Hb_000135_040--Hb_013654_020 Hb_048653_010 Hb_048653_010 Hb_000135_040--Hb_048653_010 Hb_042239_010 Hb_042239_010 Hb_000135_040--Hb_042239_010 Hb_008953_020--Hb_008221_010 Hb_008953_020--Hb_001817_070 Hb_008953_020--Hb_013654_020 Hb_008953_020--Hb_048653_010 Hb_008953_020--Hb_042239_010 Hb_008221_010--Hb_013654_020 Hb_008221_010--Hb_048653_010 Hb_008221_010--Hb_042239_010 Hb_000370_050 Hb_000370_050 Hb_008221_010--Hb_000370_050 Hb_154646_010 Hb_154646_010 Hb_001817_070--Hb_154646_010 Hb_001817_070--Hb_008221_010 Hb_001817_070--Hb_013654_020 Hb_001817_070--Hb_048653_010 Hb_013654_020--Hb_048653_010 Hb_013654_020--Hb_042239_010 Hb_013654_020--Hb_000370_050 Hb_003702_020 Hb_003702_020 Hb_013654_020--Hb_003702_020 Hb_008092_010 Hb_008092_010 Hb_013654_020--Hb_008092_010 Hb_048653_010--Hb_042239_010 Hb_048653_010--Hb_000370_050 Hb_048653_010--Hb_003702_020 Hb_048653_010--Hb_008092_010 Hb_042239_010--Hb_000370_050 Hb_042239_010--Hb_003702_020 Hb_042239_010--Hb_008092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.312918 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.147243 0

CAGE analysis