Hb_000135_050

Information

Type -
Description -
Location Contig135: 104831-108573
Sequence    

Annotation

kegg
ID cit:102617801
description putative leucine-rich repeat receptor-like protein kinase At2g19210-like
nr
ID XP_006465720.1
description PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
swissprot
ID O65924
description Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=3 SV=1
trembl
ID A0A067EF89
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002461mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like protein kinase at2g19210 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000135_050 0.0 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
2 Hb_000281_200 0.1013248739 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
3 Hb_000648_120 0.1038312342 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
4 Hb_000189_260 0.1090951894 - - conserved hypothetical protein [Ricinus communis]
5 Hb_159769_010 0.1195034609 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
6 Hb_011486_030 0.1245034967 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
7 Hb_020332_040 0.1284024584 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
8 Hb_003968_020 0.1288490258 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
9 Hb_001288_010 0.1299208471 - - -
10 Hb_012660_010 0.1309577648 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
11 Hb_000301_030 0.1439329525 - - PREDICTED: pectate lyase-like [Jatropha curcas]
12 Hb_000076_200 0.1447792836 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005356_010 0.1454915283 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
14 Hb_000563_610 0.1458844731 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
15 Hb_001442_080 0.1471436055 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
16 Hb_006620_040 0.147330321 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
17 Hb_000907_190 0.1486577883 - - PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]
18 Hb_178389_020 0.1500677609 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
19 Hb_039655_010 0.1506584798 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
20 Hb_000300_450 0.1517266015 - - PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_000135_050 Hb_000135_050 Hb_000281_200 Hb_000281_200 Hb_000135_050--Hb_000281_200 Hb_000648_120 Hb_000648_120 Hb_000135_050--Hb_000648_120 Hb_000189_260 Hb_000189_260 Hb_000135_050--Hb_000189_260 Hb_159769_010 Hb_159769_010 Hb_000135_050--Hb_159769_010 Hb_011486_030 Hb_011486_030 Hb_000135_050--Hb_011486_030 Hb_020332_040 Hb_020332_040 Hb_000135_050--Hb_020332_040 Hb_001288_010 Hb_001288_010 Hb_000281_200--Hb_001288_010 Hb_005356_010 Hb_005356_010 Hb_000281_200--Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_000281_200--Hb_007527_020 Hb_003968_020 Hb_003968_020 Hb_000281_200--Hb_003968_020 Hb_178389_020 Hb_178389_020 Hb_000281_200--Hb_178389_020 Hb_039655_010 Hb_039655_010 Hb_000281_200--Hb_039655_010 Hb_000301_030 Hb_000301_030 Hb_000648_120--Hb_000301_030 Hb_000648_120--Hb_000281_200 Hb_000245_140 Hb_000245_140 Hb_000648_120--Hb_000245_140 Hb_000648_120--Hb_020332_040 Hb_001544_040 Hb_001544_040 Hb_000648_120--Hb_001544_040 Hb_000189_260--Hb_020332_040 Hb_002917_010 Hb_002917_010 Hb_000189_260--Hb_002917_010 Hb_000976_020 Hb_000976_020 Hb_000189_260--Hb_000976_020 Hb_012660_010 Hb_012660_010 Hb_000189_260--Hb_012660_010 Hb_001357_260 Hb_001357_260 Hb_000189_260--Hb_001357_260 Hb_002048_010 Hb_002048_010 Hb_000189_260--Hb_002048_010 Hb_159769_010--Hb_039655_010 Hb_159769_010--Hb_000281_200 Hb_022250_050 Hb_022250_050 Hb_159769_010--Hb_022250_050 Hb_159769_010--Hb_005356_010 Hb_159769_010--Hb_007527_020 Hb_011486_030--Hb_012660_010 Hb_011486_030--Hb_020332_040 Hb_027141_010 Hb_027141_010 Hb_011486_030--Hb_027141_010 Hb_011486_030--Hb_000301_030 Hb_000076_200 Hb_000076_200 Hb_011486_030--Hb_000076_200 Hb_011486_030--Hb_001288_010 Hb_020332_040--Hb_012660_010 Hb_020332_040--Hb_002048_010 Hb_020332_040--Hb_027141_010 Hb_020332_040--Hb_000976_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00777807 0.214123 0.0239718 0.191521 0 0.00731369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0176531 0.027782 0.0529637 2.98422 0.11811

CAGE analysis