Hb_000136_020

Information

Type -
Description -
Location Contig136: 16954-17973
Sequence    

Annotation

kegg
ID rcu:RCOM_0036380
description Protein AFR, putative
nr
ID XP_012090851.1
description PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
swissprot
ID Q9LMR5
description F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana GN=At1g15670 PE=2 SV=1
trembl
ID A0A067JQS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03042 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_020 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
2 Hb_001250_040 0.1065420035 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
3 Hb_001571_030 0.1391506907 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
4 Hb_000076_090 0.1441828313 - - protein with unknown function [Ricinus communis]
5 Hb_002301_210 0.1474370811 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
6 Hb_001863_340 0.1479290281 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
7 Hb_000928_250 0.1480435068 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_000934_260 0.1563309261 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_110252_010 0.1580244791 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
10 Hb_003683_030 0.159209836 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
11 Hb_001894_160 0.1619384829 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006935_040 0.1621686159 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
13 Hb_002249_040 0.1623802339 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
14 Hb_003175_060 0.1648349941 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
15 Hb_001689_050 0.1658961942 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
16 Hb_000313_290 0.1672685513 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000749_200 0.1678074354 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
18 Hb_004225_140 0.1686775398 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
19 Hb_005015_020 0.1690078102 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
20 Hb_000077_210 0.1693438559 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]

Gene co-expression network

sample Hb_000136_020 Hb_000136_020 Hb_001250_040 Hb_001250_040 Hb_000136_020--Hb_001250_040 Hb_001571_030 Hb_001571_030 Hb_000136_020--Hb_001571_030 Hb_000076_090 Hb_000076_090 Hb_000136_020--Hb_000076_090 Hb_002301_210 Hb_002301_210 Hb_000136_020--Hb_002301_210 Hb_001863_340 Hb_001863_340 Hb_000136_020--Hb_001863_340 Hb_000928_250 Hb_000928_250 Hb_000136_020--Hb_000928_250 Hb_001689_050 Hb_001689_050 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_001250_040--Hb_001571_030 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001624_040 Hb_001624_040 Hb_001250_040--Hb_001624_040 Hb_003090_150 Hb_003090_150 Hb_001571_030--Hb_003090_150 Hb_000805_200 Hb_000805_200 Hb_001571_030--Hb_000805_200 Hb_007576_070 Hb_007576_070 Hb_001571_030--Hb_007576_070 Hb_027380_210 Hb_027380_210 Hb_001571_030--Hb_027380_210 Hb_000076_090--Hb_002301_210 Hb_107078_010 Hb_107078_010 Hb_000076_090--Hb_107078_010 Hb_001975_050 Hb_001975_050 Hb_000076_090--Hb_001975_050 Hb_000076_090--Hb_001250_040 Hb_000093_140 Hb_000093_140 Hb_000076_090--Hb_000093_140 Hb_002301_210--Hb_001624_040 Hb_002301_210--Hb_001250_040 Hb_000803_090 Hb_000803_090 Hb_002301_210--Hb_000803_090 Hb_002301_210--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_002301_210--Hb_003894_060 Hb_000035_490 Hb_000035_490 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_002030_110 Hb_002030_110 Hb_001863_340--Hb_002030_110 Hb_000748_110 Hb_000748_110 Hb_001863_340--Hb_000748_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001863_340--Hb_001250_040 Hb_003106_200 Hb_003106_200 Hb_000928_250--Hb_003106_200 Hb_015026_020 Hb_015026_020 Hb_000928_250--Hb_015026_020 Hb_001894_160 Hb_001894_160 Hb_000928_250--Hb_001894_160 Hb_006935_040 Hb_006935_040 Hb_000928_250--Hb_006935_040 Hb_011671_110 Hb_011671_110 Hb_000928_250--Hb_011671_110 Hb_000622_210 Hb_000622_210 Hb_000928_250--Hb_000622_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49592 28.4648 58.2548 14.9109 8.68647 10.5044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.36223 1.28333 1.2901 1.40684 32.425

CAGE analysis