Hb_000136_030

Information

Type -
Description -
Location Contig136: 18625-21757
Sequence    

Annotation

kegg
ID rcu:RCOM_0036490
description serine/arginine rich splicing factor, putative
nr
ID XP_002531582.1
description serine/arginine rich splicing factor, putative [Ricinus communis]
swissprot
ID Q9SEU4
description Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1
trembl
ID B9T013
description Serine/arginine rich splicing factor, putative OS=Ricinus communis GN=RCOM_0036490 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich sc35-like splicing factor scl30a isoform x5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09975: 18785-20923 , PASA_asmbl_09976: 18785-21741 , PASA_asmbl_09977: 18771-21730 , PASA_asmbl_09978: 18771-21730 , PASA_asmbl_09979: 18771-21730 , PASA_asmbl_09980: 18771-21730 , PASA_asmbl_09981: 19792-19984
cDNA
(Sanger)
(ID:Location)		 030_O14.ab1: 19640-21741 , 044_F14.ab1: 19243-21741

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_030 0.0 - - serine/arginine rich splicing factor, putative [Ricinus communis]
2 Hb_002942_210 0.0948550158 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
3 Hb_139002_010 0.0999472498 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
4 Hb_001839_020 0.1009549165 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
5 Hb_002042_030 0.1183285452 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
6 Hb_002814_110 0.1190714231 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
7 Hb_005288_080 0.1197004833 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008921_010 0.1210644769 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
9 Hb_005389_100 0.1214420707 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
10 Hb_077026_010 0.12217367 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
11 Hb_055235_020 0.1225178811 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
12 Hb_000139_260 0.1231727658 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
13 Hb_000847_080 0.1250790009 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
14 Hb_000175_630 0.1279763919 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
15 Hb_143629_150 0.1295759005 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
16 Hb_000190_150 0.1310702636 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B-like isoform X1 [Jatropha curcas]
17 Hb_002014_040 0.1318402328 - - site-1 protease, putative [Ricinus communis]
18 Hb_000130_420 0.1318725781 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
19 Hb_034243_040 0.133306992 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
20 Hb_001952_120 0.1343064394 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000136_030 Hb_000136_030 Hb_002942_210 Hb_002942_210 Hb_000136_030--Hb_002942_210 Hb_139002_010 Hb_139002_010 Hb_000136_030--Hb_139002_010 Hb_001839_020 Hb_001839_020 Hb_000136_030--Hb_001839_020 Hb_002042_030 Hb_002042_030 Hb_000136_030--Hb_002042_030 Hb_002814_110 Hb_002814_110 Hb_000136_030--Hb_002814_110 Hb_005288_080 Hb_005288_080 Hb_000136_030--Hb_005288_080 Hb_002014_040 Hb_002014_040 Hb_002942_210--Hb_002014_040 Hb_002942_210--Hb_139002_010 Hb_008921_010 Hb_008921_010 Hb_002942_210--Hb_008921_010 Hb_025668_010 Hb_025668_010 Hb_002942_210--Hb_025668_010 Hb_000847_080 Hb_000847_080 Hb_002942_210--Hb_000847_080 Hb_001931_030 Hb_001931_030 Hb_002942_210--Hb_001931_030 Hb_000139_260 Hb_000139_260 Hb_139002_010--Hb_000139_260 Hb_004912_030 Hb_004912_030 Hb_139002_010--Hb_004912_030 Hb_139002_010--Hb_008921_010 Hb_003436_020 Hb_003436_020 Hb_139002_010--Hb_003436_020 Hb_139002_010--Hb_002014_040 Hb_015292_040 Hb_015292_040 Hb_001839_020--Hb_015292_040 Hb_000663_020 Hb_000663_020 Hb_001839_020--Hb_000663_020 Hb_001322_020 Hb_001322_020 Hb_001839_020--Hb_001322_020 Hb_077026_010 Hb_077026_010 Hb_001839_020--Hb_077026_010 Hb_005731_110 Hb_005731_110 Hb_001839_020--Hb_005731_110 Hb_000414_050 Hb_000414_050 Hb_002042_030--Hb_000414_050 Hb_000915_080 Hb_000915_080 Hb_002042_030--Hb_000915_080 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_001418_040 Hb_001418_040 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120 Hb_011972_020 Hb_011972_020 Hb_002814_110--Hb_011972_020 Hb_001153_050 Hb_001153_050 Hb_002814_110--Hb_001153_050 Hb_006573_160 Hb_006573_160 Hb_002814_110--Hb_006573_160 Hb_000130_420 Hb_000130_420 Hb_002814_110--Hb_000130_420 Hb_055235_020 Hb_055235_020 Hb_002814_110--Hb_055235_020 Hb_007800_020 Hb_007800_020 Hb_002814_110--Hb_007800_020 Hb_000922_020 Hb_000922_020 Hb_005288_080--Hb_000922_020 Hb_000525_100 Hb_000525_100 Hb_005288_080--Hb_000525_100 Hb_000679_340 Hb_000679_340 Hb_005288_080--Hb_000679_340 Hb_000264_070 Hb_000264_070 Hb_005288_080--Hb_000264_070 Hb_001077_030 Hb_001077_030 Hb_005288_080--Hb_001077_030 Hb_000156_160 Hb_000156_160 Hb_005288_080--Hb_000156_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5882 19.9168 33.092 20.8556 37.8659 14.4809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6545 14.253 3.90997 10.2403 21.5361

CAGE analysis