Hb_000136_040

Information

Type -
Description -
Location Contig136: 22146-35440
Sequence    

Annotation

kegg
ID pmum:103339605
description protein RRP5 homolog
nr
ID XP_012090853.1
description PREDICTED: protein RRP5 homolog [Jatropha curcas]
swissprot
ID A7MB10
description Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
trembl
ID A0A067JDG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03044 PE=4 SV=1
Gene Ontology
ID GO:0005730
description protein rrp5 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09983: 22751-27050 , PASA_asmbl_09984: 28580-30171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_040 0.0 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
2 Hb_000136_060 0.1177715909 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
3 Hb_003623_030 0.1212778939 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
4 Hb_000470_080 0.1236836154 - - Caldesmon, putative [Ricinus communis]
5 Hb_000743_050 0.1278850506 - - unnamed protein product [Vitis vinifera]
6 Hb_005205_020 0.1294225911 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
7 Hb_002028_170 0.1297269921 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
8 Hb_001780_090 0.1319009813 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
9 Hb_000878_010 0.1326766255 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
10 Hb_002974_060 0.1330227315 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
11 Hb_001529_040 0.1369479737 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_116929_010 0.1383909076 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
13 Hb_001117_170 0.1386726102 - - -
14 Hb_007805_010 0.1410667057 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
15 Hb_009270_010 0.1420549338 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
16 Hb_126643_010 0.1432668134 - - Protein transport protein Sec24C, putative [Ricinus communis]
17 Hb_000158_100 0.1447275239 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002551_070 0.1447815706 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
19 Hb_000544_050 0.1455238719 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_012180_030 0.1455734665 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000136_040 Hb_000136_040 Hb_000136_060 Hb_000136_060 Hb_000136_040--Hb_000136_060 Hb_003623_030 Hb_003623_030 Hb_000136_040--Hb_003623_030 Hb_000470_080 Hb_000470_080 Hb_000136_040--Hb_000470_080 Hb_000743_050 Hb_000743_050 Hb_000136_040--Hb_000743_050 Hb_005205_020 Hb_005205_020 Hb_000136_040--Hb_005205_020 Hb_002028_170 Hb_002028_170 Hb_000136_040--Hb_002028_170 Hb_000158_100 Hb_000158_100 Hb_000136_060--Hb_000158_100 Hb_000136_060--Hb_002028_170 Hb_000136_060--Hb_003623_030 Hb_011716_020 Hb_011716_020 Hb_000136_060--Hb_011716_020 Hb_000136_060--Hb_000743_050 Hb_001900_110 Hb_001900_110 Hb_000136_060--Hb_001900_110 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_003623_030--Hb_002028_170 Hb_000107_040 Hb_000107_040 Hb_003623_030--Hb_000107_040 Hb_003623_030--Hb_000158_100 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_032631_040 Hb_032631_040 Hb_003623_030--Hb_032631_040 Hb_007805_010 Hb_007805_010 Hb_000470_080--Hb_007805_010 Hb_005679_050 Hb_005679_050 Hb_000470_080--Hb_005679_050 Hb_002974_060 Hb_002974_060 Hb_000470_080--Hb_002974_060 Hb_011310_160 Hb_011310_160 Hb_000470_080--Hb_011310_160 Hb_011928_020 Hb_011928_020 Hb_000470_080--Hb_011928_020 Hb_003294_090 Hb_003294_090 Hb_000470_080--Hb_003294_090 Hb_000739_220 Hb_000739_220 Hb_000743_050--Hb_000739_220 Hb_000743_050--Hb_000158_100 Hb_000347_130 Hb_000347_130 Hb_000743_050--Hb_000347_130 Hb_001322_210 Hb_001322_210 Hb_000743_050--Hb_001322_210 Hb_081879_030 Hb_081879_030 Hb_000743_050--Hb_081879_030 Hb_025012_010 Hb_025012_010 Hb_000743_050--Hb_025012_010 Hb_007904_220 Hb_007904_220 Hb_005205_020--Hb_007904_220 Hb_001943_010 Hb_001943_010 Hb_005205_020--Hb_001943_010 Hb_002067_150 Hb_002067_150 Hb_005205_020--Hb_002067_150 Hb_005205_020--Hb_001322_210 Hb_001771_130 Hb_001771_130 Hb_005205_020--Hb_001771_130 Hb_005205_020--Hb_025012_010 Hb_002028_170--Hb_011716_020 Hb_002028_170--Hb_000158_100 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67033 3.34937 0.487713 0.809854 4.75658 7.67182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93764 1.44919 3.53391 5.95604 3.74754

CAGE analysis