Hb_000136_060

Information

Type -
Description -
Location Contig136: 56217-64285
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06250g
description POPTRDRAFT_256037; hypothetical protein
nr
ID XP_002322744.2
description hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IID8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06250g PE=4 SV=2
Gene Ontology
ID GO:0005730
description protein rrp5 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09985: 58574-58816 , PASA_asmbl_09986: 59660-87809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_060 0.0 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
2 Hb_000158_100 0.0797182072 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002028_170 0.0837153252 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
4 Hb_003623_030 0.0896595724 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
5 Hb_011716_020 0.0949549079 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
6 Hb_000743_050 0.1010968643 - - unnamed protein product [Vitis vinifera]
7 Hb_001900_110 0.1074261155 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
8 Hb_003916_010 0.1100231324 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
9 Hb_012180_030 0.1118458554 - - unnamed protein product [Vitis vinifera]
10 Hb_000739_220 0.1129051203 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
11 Hb_002551_070 0.1132290976 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
12 Hb_001034_070 0.1169965686 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_022400_010 0.1173639905 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
14 Hb_000136_040 0.1177715909 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
15 Hb_000071_180 0.1189890246 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
16 Hb_005228_130 0.1202400757 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_002974_060 0.120557714 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
18 Hb_025012_010 0.1205589838 - - PREDICTED: importin-4 [Vitis vinifera]
19 Hb_002600_140 0.1231690165 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
20 Hb_000544_050 0.1233084013 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_000136_060 Hb_000136_060 Hb_000158_100 Hb_000158_100 Hb_000136_060--Hb_000158_100 Hb_002028_170 Hb_002028_170 Hb_000136_060--Hb_002028_170 Hb_003623_030 Hb_003623_030 Hb_000136_060--Hb_003623_030 Hb_011716_020 Hb_011716_020 Hb_000136_060--Hb_011716_020 Hb_000743_050 Hb_000743_050 Hb_000136_060--Hb_000743_050 Hb_001900_110 Hb_001900_110 Hb_000136_060--Hb_001900_110 Hb_000158_100--Hb_000743_050 Hb_000158_100--Hb_003623_030 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_000158_100--Hb_001900_110 Hb_002028_170--Hb_011716_020 Hb_002028_170--Hb_003623_030 Hb_007904_220 Hb_007904_220 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_000107_040 Hb_000107_040 Hb_003623_030--Hb_000107_040 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_032631_040 Hb_032631_040 Hb_003623_030--Hb_032631_040 Hb_002974_060 Hb_002974_060 Hb_011716_020--Hb_002974_060 Hb_002600_140 Hb_002600_140 Hb_011716_020--Hb_002600_140 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_000743_050--Hb_000739_220 Hb_000347_130 Hb_000347_130 Hb_000743_050--Hb_000347_130 Hb_001322_210 Hb_001322_210 Hb_000743_050--Hb_001322_210 Hb_081879_030 Hb_081879_030 Hb_000743_050--Hb_081879_030 Hb_025012_010 Hb_025012_010 Hb_000743_050--Hb_025012_010 Hb_141547_010 Hb_141547_010 Hb_001900_110--Hb_141547_010 Hb_029142_010 Hb_029142_010 Hb_001900_110--Hb_029142_010 Hb_000997_030 Hb_000997_030 Hb_001900_110--Hb_000997_030 Hb_000023_060 Hb_000023_060 Hb_001900_110--Hb_000023_060 Hb_000236_080 Hb_000236_080 Hb_001900_110--Hb_000236_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75706 5.56237 1.4933 2.83694 6.21893 13.9089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38168 2.43474 3.43152 8.52259 3.71414

CAGE analysis