Hb_000136_080

Information

Type -
Description -
Location Contig136: 77604-84437
Sequence    

Annotation

kegg
ID vvi:100853955
description uncharacterized LOC100853955
nr
ID KFK28310.1
description hypothetical protein AALP_AA8G499800 [Arabis alpina]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A087GEK8
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_080 0.0 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]
2 Hb_003413_010 0.1279740372 - - hypothetical protein, partial [Pseudomonas fluorescens]
3 Hb_003900_040 0.1630192759 - - hypothetical protein [Lotus japonicus]
4 Hb_004899_210 0.1647289092 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
5 Hb_001174_050 0.1713992868 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_159124_010 0.1864673485 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
7 Hb_179183_010 0.1867532749 - - RALF-LIKE 32 family protein [Populus trichocarpa]
8 Hb_039547_010 0.1886772757 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
9 Hb_000916_010 0.1888162161 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
10 Hb_006120_160 0.1890872613 - - -
11 Hb_094694_010 0.189330737 - - -
12 Hb_101034_010 0.1897580869 - - -
13 Hb_000975_060 0.1898879993 - - -
14 Hb_005432_020 0.1905368284 - - -
15 Hb_000248_020 0.190545208 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
16 Hb_181013_010 0.1915693088 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
17 Hb_000142_090 0.1925555172 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
18 Hb_134377_070 0.1945932011 - - -
19 Hb_000209_010 0.1970590322 - - -
20 Hb_008642_050 0.1981826876 - - -

Gene co-expression network

sample Hb_000136_080 Hb_000136_080 Hb_003413_010 Hb_003413_010 Hb_000136_080--Hb_003413_010 Hb_003900_040 Hb_003900_040 Hb_000136_080--Hb_003900_040 Hb_004899_210 Hb_004899_210 Hb_000136_080--Hb_004899_210 Hb_001174_050 Hb_001174_050 Hb_000136_080--Hb_001174_050 Hb_159124_010 Hb_159124_010 Hb_000136_080--Hb_159124_010 Hb_179183_010 Hb_179183_010 Hb_000136_080--Hb_179183_010 Hb_000975_260 Hb_000975_260 Hb_003413_010--Hb_000975_260 Hb_000505_120 Hb_000505_120 Hb_003413_010--Hb_000505_120 Hb_011280_020 Hb_011280_020 Hb_003413_010--Hb_011280_020 Hb_070905_010 Hb_070905_010 Hb_003413_010--Hb_070905_010 Hb_003413_010--Hb_001174_050 Hb_003900_040--Hb_004899_210 Hb_144027_010 Hb_144027_010 Hb_003900_040--Hb_144027_010 Hb_180214_010 Hb_180214_010 Hb_003900_040--Hb_180214_010 Hb_032717_090 Hb_032717_090 Hb_003900_040--Hb_032717_090 Hb_001250_030 Hb_001250_030 Hb_003900_040--Hb_001250_030 Hb_003169_040 Hb_003169_040 Hb_003900_040--Hb_003169_040 Hb_004899_210--Hb_144027_010 Hb_007575_020 Hb_007575_020 Hb_004899_210--Hb_007575_020 Hb_004899_210--Hb_001250_030 Hb_008642_050 Hb_008642_050 Hb_004899_210--Hb_008642_050 Hb_017640_010 Hb_017640_010 Hb_004899_210--Hb_017640_010 Hb_001355_060 Hb_001355_060 Hb_001174_050--Hb_001355_060 Hb_001174_050--Hb_159124_010 Hb_005432_020 Hb_005432_020 Hb_001174_050--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_001174_050--Hb_101034_010 Hb_181013_010 Hb_181013_010 Hb_001174_050--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_001174_050--Hb_000142_090 Hb_159124_010--Hb_181013_010 Hb_159124_010--Hb_005432_020 Hb_159124_010--Hb_000142_090 Hb_159124_010--Hb_101034_010 Hb_134377_070 Hb_134377_070 Hb_159124_010--Hb_134377_070 Hb_006120_160 Hb_006120_160 Hb_159124_010--Hb_006120_160 Hb_179183_010--Hb_006120_160 Hb_179183_010--Hb_101034_010 Hb_179183_010--Hb_159124_010 Hb_000916_010 Hb_000916_010 Hb_179183_010--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_179183_010--Hb_039547_010 Hb_179183_010--Hb_005432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0109981 0.0813207 0.00270772 0.00515763 0 0.0065037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.049103 0.238655

CAGE analysis