Hb_000136_090

Information

Type -
Description -
Location Contig136: 85603-89044
Sequence    

Annotation

kegg
ID rcu:RCOM_0036510
description programmed cell death protein, putative
nr
ID XP_002531584.1
description programmed cell death protein, putative [Ricinus communis]
swissprot
ID Q05022
description rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP5 PE=1 SV=1
trembl
ID B9T015
description Programmed cell death protein, putative OS=Ricinus communis GN=RCOM_0036510 PE=4 SV=1
Gene Ontology
ID GO:0005730
description protein rrp5 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09986: 59660-87809 , PASA_asmbl_09987: 87849-88153 , PASA_asmbl_09988: 88384-88933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_090 0.0 - - programmed cell death protein, putative [Ricinus communis]
2 Hb_012180_050 0.0655654462 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
3 Hb_000363_130 0.0723495021 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
4 Hb_001028_070 0.0728053469 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
5 Hb_000300_360 0.0731921906 - - PREDICTED: exosome component 10 [Jatropha curcas]
6 Hb_006252_020 0.0733538884 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
7 Hb_000120_610 0.0740986477 - - mitotic control protein dis3, putative [Ricinus communis]
8 Hb_000158_130 0.0743087528 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
9 Hb_050847_020 0.0758157855 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_011386_040 0.0760067042 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
11 Hb_000098_130 0.0763837975 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
12 Hb_000046_010 0.076915737 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
13 Hb_000567_010 0.0778446689 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
14 Hb_140049_020 0.0783209684 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
15 Hb_003935_030 0.0787830811 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
16 Hb_000510_310 0.0798006559 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
17 Hb_002163_010 0.0806113246 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
18 Hb_000152_340 0.0817864204 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
19 Hb_003124_130 0.0824218236 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
20 Hb_001718_090 0.0833231785 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]

Gene co-expression network

sample Hb_000136_090 Hb_000136_090 Hb_012180_050 Hb_012180_050 Hb_000136_090--Hb_012180_050 Hb_000363_130 Hb_000363_130 Hb_000136_090--Hb_000363_130 Hb_001028_070 Hb_001028_070 Hb_000136_090--Hb_001028_070 Hb_000300_360 Hb_000300_360 Hb_000136_090--Hb_000300_360 Hb_006252_020 Hb_006252_020 Hb_000136_090--Hb_006252_020 Hb_000120_610 Hb_000120_610 Hb_000136_090--Hb_000120_610 Hb_063716_080 Hb_063716_080 Hb_012180_050--Hb_063716_080 Hb_002960_160 Hb_002960_160 Hb_012180_050--Hb_002960_160 Hb_000158_130 Hb_000158_130 Hb_012180_050--Hb_000158_130 Hb_000098_130 Hb_000098_130 Hb_012180_050--Hb_000098_130 Hb_000796_190 Hb_000796_190 Hb_012180_050--Hb_000796_190 Hb_001946_300 Hb_001946_300 Hb_000363_130--Hb_001946_300 Hb_140049_020 Hb_140049_020 Hb_000363_130--Hb_140049_020 Hb_000313_340 Hb_000313_340 Hb_000363_130--Hb_000313_340 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_001221_150 Hb_001221_150 Hb_001028_070--Hb_001221_150 Hb_000567_010 Hb_000567_010 Hb_001028_070--Hb_000567_010 Hb_004970_160 Hb_004970_160 Hb_001028_070--Hb_004970_160 Hb_001028_070--Hb_000120_610 Hb_001417_050 Hb_001417_050 Hb_001028_070--Hb_001417_050 Hb_007982_070 Hb_007982_070 Hb_000300_360--Hb_007982_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000300_360--Hb_000796_190 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_007558_120 Hb_007558_120 Hb_000300_360--Hb_007558_120 Hb_002174_020 Hb_002174_020 Hb_006252_020--Hb_002174_020 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000594_020 Hb_000594_020 Hb_000120_610--Hb_000594_020 Hb_002659_060 Hb_002659_060 Hb_000120_610--Hb_002659_060 Hb_000120_610--Hb_140049_020 Hb_004899_070 Hb_004899_070 Hb_000120_610--Hb_004899_070 Hb_000120_610--Hb_004970_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1677 27.6995 11.4507 9.43784 27.9259 29.8967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7521 13.1041 8.5602 18.2324 7.43271

CAGE analysis