Hb_000136_100

Information

Type -
Description -
Location Contig136: 90415-94821
Sequence    

Annotation

kegg
ID rcu:RCOM_1012060
description syntaxin, putative
nr
ID XP_012090854.1
description PREDICTED: syntaxin-61 [Jatropha curcas]
swissprot
ID Q946Y7
description Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1
trembl
ID A0A067JDJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03045 PE=4 SV=1
Gene Ontology
ID GO:0005802
description syntaxin 61 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09994: 90366-101261 , PASA_asmbl_09995: 90366-101261 , PASA_asmbl_09996: 90935-100976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_100 0.0 - - PREDICTED: syntaxin-61 [Jatropha curcas]
2 Hb_066842_010 0.0870685721 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
3 Hb_007894_010 0.0964012543 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
4 Hb_000060_050 0.0964588098 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
5 Hb_000258_240 0.0978491318 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
6 Hb_062537_010 0.0994160612 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
7 Hb_002150_040 0.0998329502 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
8 Hb_000115_150 0.1016173571 - - PREDICTED: IST1 homolog [Jatropha curcas]
9 Hb_000025_190 0.1017850824 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
10 Hb_086085_020 0.1027085534 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
11 Hb_002631_010 0.1035388907 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
12 Hb_003929_270 0.1063531374 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_003529_030 0.1074922405 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
14 Hb_000402_130 0.107672142 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
15 Hb_000240_030 0.1103263907 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000127_140 0.1104828193 - - transporter-related family protein [Populus trichocarpa]
17 Hb_008147_090 0.1106602191 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005218_020 0.1115845156 - - Uncharacterized protein isoform 3 [Theobroma cacao]
19 Hb_005701_120 0.1127270179 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
20 Hb_010560_050 0.1134539601 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000136_100 Hb_000136_100 Hb_066842_010 Hb_066842_010 Hb_000136_100--Hb_066842_010 Hb_007894_010 Hb_007894_010 Hb_000136_100--Hb_007894_010 Hb_000060_050 Hb_000060_050 Hb_000136_100--Hb_000060_050 Hb_000258_240 Hb_000258_240 Hb_000136_100--Hb_000258_240 Hb_062537_010 Hb_062537_010 Hb_000136_100--Hb_062537_010 Hb_002150_040 Hb_002150_040 Hb_000136_100--Hb_002150_040 Hb_002392_010 Hb_002392_010 Hb_066842_010--Hb_002392_010 Hb_001946_390 Hb_001946_390 Hb_066842_010--Hb_001946_390 Hb_000590_120 Hb_000590_120 Hb_066842_010--Hb_000590_120 Hb_001269_190 Hb_001269_190 Hb_066842_010--Hb_001269_190 Hb_000185_220 Hb_000185_220 Hb_066842_010--Hb_000185_220 Hb_010407_140 Hb_010407_140 Hb_007894_010--Hb_010407_140 Hb_000127_140 Hb_000127_140 Hb_007894_010--Hb_000127_140 Hb_005701_120 Hb_005701_120 Hb_007894_010--Hb_005701_120 Hb_000197_020 Hb_000197_020 Hb_007894_010--Hb_000197_020 Hb_001957_010 Hb_001957_010 Hb_007894_010--Hb_001957_010 Hb_003305_040 Hb_003305_040 Hb_000060_050--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_000060_050--Hb_001489_110 Hb_002660_170 Hb_002660_170 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_000060_050--Hb_000173_410 Hb_002781_030 Hb_002781_030 Hb_000258_240--Hb_002781_030 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_003988_050 Hb_003988_050 Hb_000258_240--Hb_003988_050 Hb_000258_240--Hb_062537_010 Hb_000928_190 Hb_000928_190 Hb_000258_240--Hb_000928_190 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190 Hb_062537_010--Hb_000025_190 Hb_001348_020 Hb_001348_020 Hb_062537_010--Hb_001348_020 Hb_000115_150 Hb_000115_150 Hb_062537_010--Hb_000115_150 Hb_023001_040 Hb_023001_040 Hb_062537_010--Hb_023001_040 Hb_062537_010--Hb_003988_050 Hb_000159_090 Hb_000159_090 Hb_002150_040--Hb_000159_090 Hb_000140_280 Hb_000140_280 Hb_002150_040--Hb_000140_280 Hb_005218_020 Hb_005218_020 Hb_002150_040--Hb_005218_020 Hb_000069_210 Hb_000069_210 Hb_002150_040--Hb_000069_210 Hb_086085_020 Hb_086085_020 Hb_002150_040--Hb_086085_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42879 6.53179 15.4521 53.1004 8.71057 18.6903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9722 20.0921 20.9619 24.4098 21.3054

CAGE analysis