Hb_000136_120

Information

Type -
Description -
Location Contig136: 104226-105516
Sequence    

Annotation

kegg
ID rcu:RCOM_0036520
description sigma factor sigb regulation protein rsbq, putative (EC:3.1.1.1)
nr
ID XP_012090855.1
description PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
swissprot
ID Q9SQR3
description Probable strigolactone esterase D14 homolog OS=Arabidopsis thaliana GN=D14 PE=1 SV=1
trembl
ID A0A067JGI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03046 PE=4 SV=1
Gene Ontology
ID GO:0052689
description probable strigolactone esterase d14 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09997: 104290-105567
cDNA
(Sanger)
(ID:Location)		 005_P13.ab1: 104682-105566 , 007_F22.ab1: 104680-105566 , 029_L18.ab1: 104746-105564 , 038_G16.ab1: 104681-105564 , 043_C04.ab1: 104701-105564 , 045_K01.ab1: 104708-105566 , 052_I05.ab1: 104724-105564

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_120 0.0 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
2 Hb_000167_150 0.0142584506 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
3 Hb_006594_030 0.0250030294 - - -
4 Hb_001946_070 0.0395094967 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_001153_170 0.0445015568 - - PREDICTED: protein HOTHEAD [Populus euphratica]
6 Hb_025048_050 0.0497243535 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
7 Hb_089140_130 0.0503033412 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
8 Hb_001329_060 0.0508638981 - - Polygalacturonase precursor, putative [Ricinus communis]
9 Hb_006586_060 0.0546268106 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_000735_190 0.055263635 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
11 Hb_009771_010 0.0562570027 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
12 Hb_011316_080 0.0633695458 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_102129_040 0.0634845281 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
14 Hb_000130_340 0.0663870815 - - -
15 Hb_003411_070 0.0687981113 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
16 Hb_007617_030 0.0690123992 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
17 Hb_001671_070 0.0692579697 - - kinase, putative [Ricinus communis]
18 Hb_000243_360 0.0695539051 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
19 Hb_005357_210 0.0701956156 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
20 Hb_001546_140 0.0706243705 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000136_120 Hb_000136_120 Hb_000167_150 Hb_000167_150 Hb_000136_120--Hb_000167_150 Hb_006594_030 Hb_006594_030 Hb_000136_120--Hb_006594_030 Hb_001946_070 Hb_001946_070 Hb_000136_120--Hb_001946_070 Hb_001153_170 Hb_001153_170 Hb_000136_120--Hb_001153_170 Hb_025048_050 Hb_025048_050 Hb_000136_120--Hb_025048_050 Hb_089140_130 Hb_089140_130 Hb_000136_120--Hb_089140_130 Hb_000167_150--Hb_006594_030 Hb_000167_150--Hb_001946_070 Hb_001329_060 Hb_001329_060 Hb_000167_150--Hb_001329_060 Hb_006586_060 Hb_006586_060 Hb_000167_150--Hb_006586_060 Hb_000167_150--Hb_025048_050 Hb_006594_030--Hb_001153_170 Hb_006594_030--Hb_089140_130 Hb_009771_010 Hb_009771_010 Hb_006594_030--Hb_009771_010 Hb_007617_030 Hb_007617_030 Hb_006594_030--Hb_007617_030 Hb_001946_070--Hb_025048_050 Hb_001946_070--Hb_001329_060 Hb_005357_210 Hb_005357_210 Hb_001946_070--Hb_005357_210 Hb_001946_070--Hb_006594_030 Hb_001153_170--Hb_089140_130 Hb_001153_170--Hb_009771_010 Hb_011316_080 Hb_011316_080 Hb_001153_170--Hb_011316_080 Hb_001546_140 Hb_001546_140 Hb_001153_170--Hb_001546_140 Hb_001153_170--Hb_007617_030 Hb_025048_050--Hb_005357_210 Hb_025048_050--Hb_001329_060 Hb_000847_040 Hb_000847_040 Hb_025048_050--Hb_000847_040 Hb_089140_130--Hb_011316_080 Hb_089140_130--Hb_009771_010 Hb_089140_130--Hb_001546_140 Hb_089140_130--Hb_000847_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0325979 95.3187 17.2097 0 0.0187002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 34.9059

CAGE analysis