Hb_000136_130

Information

Type -
Description -
Location Contig136: 113888-114996
Sequence    

Annotation

kegg
ID sot:102597158
description mediator of RNA polymerase II transcription subunit 7a-like
nr
ID XP_004238356.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
swissprot
ID Q9LZD7
description Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1
trembl
ID K4BVM2
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g081430.2 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mediator of rna polymerase ii transcription subunit 7a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09999: 114528-114732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_130 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
2 Hb_168973_010 0.1688845634 - - -
3 Hb_000074_060 0.1827076761 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
4 Hb_000850_040 0.1881867246 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004718_040 0.1896404893 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
6 Hb_002122_010 0.1910279531 - - -
7 Hb_001623_290 0.1982596493 - - unknown [Populus trichocarpa]
8 Hb_008096_030 0.2029364019 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
9 Hb_002375_040 0.2042048796 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
10 Hb_001623_300 0.2050400433 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
11 Hb_013749_010 0.2054529601 - - conserved hypothetical protein [Ricinus communis]
12 Hb_054745_010 0.2072605022 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001124_020 0.2088387336 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
14 Hb_003376_050 0.2091109494 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_001191_110 0.2092179766 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
16 Hb_106411_010 0.2111058538 - - Ribosomal protein S25 family protein [Theobroma cacao]
17 Hb_129672_010 0.2112524357 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
18 Hb_010655_020 0.2117471397 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
19 Hb_000022_200 0.2145234632 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
20 Hb_000174_050 0.215643521 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]

Gene co-expression network

sample Hb_000136_130 Hb_000136_130 Hb_168973_010 Hb_168973_010 Hb_000136_130--Hb_168973_010 Hb_000074_060 Hb_000074_060 Hb_000136_130--Hb_000074_060 Hb_000850_040 Hb_000850_040 Hb_000136_130--Hb_000850_040 Hb_004718_040 Hb_004718_040 Hb_000136_130--Hb_004718_040 Hb_002122_010 Hb_002122_010 Hb_000136_130--Hb_002122_010 Hb_001623_290 Hb_001623_290 Hb_000136_130--Hb_001623_290 Hb_008096_030 Hb_008096_030 Hb_168973_010--Hb_008096_030 Hb_115477_010 Hb_115477_010 Hb_168973_010--Hb_115477_010 Hb_115107_010 Hb_115107_010 Hb_168973_010--Hb_115107_010 Hb_005023_030 Hb_005023_030 Hb_168973_010--Hb_005023_030 Hb_007763_060 Hb_007763_060 Hb_168973_010--Hb_007763_060 Hb_168973_010--Hb_000074_060 Hb_005527_020 Hb_005527_020 Hb_000074_060--Hb_005527_020 Hb_000329_560 Hb_000329_560 Hb_000074_060--Hb_000329_560 Hb_002562_110 Hb_002562_110 Hb_000074_060--Hb_002562_110 Hb_106415_010 Hb_106415_010 Hb_000074_060--Hb_106415_010 Hb_129672_010 Hb_129672_010 Hb_000074_060--Hb_129672_010 Hb_183557_010 Hb_183557_010 Hb_000850_040--Hb_183557_010 Hb_003633_040 Hb_003633_040 Hb_000850_040--Hb_003633_040 Hb_075764_010 Hb_075764_010 Hb_000850_040--Hb_075764_010 Hb_026228_020 Hb_026228_020 Hb_000850_040--Hb_026228_020 Hb_000850_040--Hb_004718_040 Hb_106411_010 Hb_106411_010 Hb_000850_040--Hb_106411_010 Hb_000521_160 Hb_000521_160 Hb_004718_040--Hb_000521_160 Hb_002518_030 Hb_002518_030 Hb_004718_040--Hb_002518_030 Hb_002232_100 Hb_002232_100 Hb_004718_040--Hb_002232_100 Hb_001124_020 Hb_001124_020 Hb_004718_040--Hb_001124_020 Hb_000080_060 Hb_000080_060 Hb_004718_040--Hb_000080_060 Hb_000453_160 Hb_000453_160 Hb_004718_040--Hb_000453_160 Hb_002611_020 Hb_002611_020 Hb_002122_010--Hb_002611_020 Hb_000230_180 Hb_000230_180 Hb_002122_010--Hb_000230_180 Hb_002122_010--Hb_075764_010 Hb_001191_110 Hb_001191_110 Hb_002122_010--Hb_001191_110 Hb_000696_010 Hb_000696_010 Hb_002122_010--Hb_000696_010 Hb_010003_010 Hb_010003_010 Hb_002122_010--Hb_010003_010 Hb_001623_300 Hb_001623_300 Hb_001623_290--Hb_001623_300 Hb_000429_250 Hb_000429_250 Hb_001623_290--Hb_000429_250 Hb_112047_010 Hb_112047_010 Hb_001623_290--Hb_112047_010 Hb_010964_020 Hb_010964_020 Hb_001623_290--Hb_010964_020 Hb_006663_090 Hb_006663_090 Hb_001623_290--Hb_006663_090 Hb_002687_080 Hb_002687_080 Hb_001623_290--Hb_002687_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.858361 0 1.18029 2.05857 0.669735 2.46055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.322214 0.760501 0.74338 0.580511 0.404867

CAGE analysis