Hb_000136_140

Information

Type -
Description -
Location Contig136: 115275-119701
Sequence    

Annotation

kegg
ID rcu:RCOM_0763260
description hypothetical protein
nr
ID XP_012090860.1
description PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
swissprot
ID Q54FD5
description TNF receptor-associated factor family protein DDB_G0290931 OS=Dictyostelium discoideum GN=DDB_G0290931 PE=3 SV=1
trembl
ID A0A067JDH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03049 PE=4 SV=1
Gene Ontology
ID GO:0009507
description tnf receptor-associated factor family protein ddb_g0290965 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10000: 115303-119761 , PASA_asmbl_10001: 115790-115963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_140 0.0 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
2 Hb_000365_100 0.0899147161 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
3 Hb_001512_040 0.0974331522 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
4 Hb_000244_180 0.1015743845 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012573_050 0.1029353995 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
6 Hb_000836_290 0.1037750694 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_006810_030 0.1140405843 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_000352_120 0.1149835329 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
9 Hb_001482_040 0.1153787461 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007975_060 0.1177386609 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
11 Hb_000101_080 0.117859377 - - PREDICTED: protein CREG1 [Jatropha curcas]
12 Hb_000108_050 0.1197126454 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
13 Hb_011486_040 0.1210779006 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
14 Hb_000613_010 0.1212353294 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
15 Hb_032202_220 0.1222054679 - - ring finger protein, putative [Ricinus communis]
16 Hb_001279_030 0.12237696 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
17 Hb_000853_440 0.1230361382 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
18 Hb_001491_030 0.1231322559 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
19 Hb_000062_540 0.1236419275 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000061_180 0.1245780075 - - exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000136_140 Hb_000136_140 Hb_000365_100 Hb_000365_100 Hb_000136_140--Hb_000365_100 Hb_001512_040 Hb_001512_040 Hb_000136_140--Hb_001512_040 Hb_000244_180 Hb_000244_180 Hb_000136_140--Hb_000244_180 Hb_012573_050 Hb_012573_050 Hb_000136_140--Hb_012573_050 Hb_000836_290 Hb_000836_290 Hb_000136_140--Hb_000836_290 Hb_006810_030 Hb_006810_030 Hb_000136_140--Hb_006810_030 Hb_000347_040 Hb_000347_040 Hb_000365_100--Hb_000347_040 Hb_001604_120 Hb_001604_120 Hb_000365_100--Hb_001604_120 Hb_000188_050 Hb_000188_050 Hb_000365_100--Hb_000188_050 Hb_013726_080 Hb_013726_080 Hb_000365_100--Hb_013726_080 Hb_002498_140 Hb_002498_140 Hb_000365_100--Hb_002498_140 Hb_000101_080 Hb_000101_080 Hb_001512_040--Hb_000101_080 Hb_032202_220 Hb_032202_220 Hb_001512_040--Hb_032202_220 Hb_019181_040 Hb_019181_040 Hb_001512_040--Hb_019181_040 Hb_004754_050 Hb_004754_050 Hb_001512_040--Hb_004754_050 Hb_002326_040 Hb_002326_040 Hb_001512_040--Hb_002326_040 Hb_001512_040--Hb_000836_290 Hb_000244_180--Hb_012573_050 Hb_000244_180--Hb_004754_050 Hb_171215_010 Hb_171215_010 Hb_000244_180--Hb_171215_010 Hb_007975_060 Hb_007975_060 Hb_000244_180--Hb_007975_060 Hb_000721_030 Hb_000721_030 Hb_000244_180--Hb_000721_030 Hb_001876_040 Hb_001876_040 Hb_000244_180--Hb_001876_040 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_012573_050--Hb_000721_030 Hb_000116_130 Hb_000116_130 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_012573_050--Hb_007975_060 Hb_004631_150 Hb_004631_150 Hb_000836_290--Hb_004631_150 Hb_000261_050 Hb_000261_050 Hb_000836_290--Hb_000261_050 Hb_171334_010 Hb_171334_010 Hb_000836_290--Hb_171334_010 Hb_000836_290--Hb_000347_040 Hb_000836_290--Hb_032202_220 Hb_000056_130 Hb_000056_130 Hb_006810_030--Hb_000056_130 Hb_001191_110 Hb_001191_110 Hb_006810_030--Hb_001191_110 Hb_001491_030 Hb_001491_030 Hb_006810_030--Hb_001491_030 Hb_000184_070 Hb_000184_070 Hb_006810_030--Hb_000184_070 Hb_000071_150 Hb_000071_150 Hb_006810_030--Hb_000071_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04246 1.89943 8.96699 9.91387 6.43844 6.43255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22776 3.96531 6.5997 2.91853 9.92415

CAGE analysis