Hb_000136_170

Information

Type -
Description -
Location Contig136: 137248-142407
Sequence    

Annotation

kegg
ID rcu:RCOM_0084540
description structural constituent of ribosome, putative
nr
ID XP_012086501.1
description PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
swissprot
ID Q94A32
description Protein FATTY ACID EXPORT 2, chloroplastic OS=Arabidopsis thaliana GN=FAX2 PE=2 SV=1
trembl
ID A0A067JSG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23949 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal l5e family protein isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10005: 137355-137505 , PASA_asmbl_10006: 139351-139642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_170 0.0 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
2 Hb_002713_070 0.0568771733 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
3 Hb_000134_070 0.0613785804 - - 60S ribosomal protein L6, putative [Ricinus communis]
4 Hb_001505_020 0.0650350159 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
5 Hb_003623_050 0.0689036377 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000265_050 0.0713536445 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
7 Hb_004567_120 0.0715484299 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
8 Hb_002660_030 0.0733623973 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003226_210 0.0757075837 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
10 Hb_011644_030 0.0762707272 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
11 Hb_004375_100 0.0764124047 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
12 Hb_002925_030 0.0764922588 - - 40S ribosomal protein S16B [Hevea brasiliensis]
13 Hb_006816_530 0.0780633881 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_003994_040 0.0784235943 - - -
15 Hb_089839_020 0.0792855786 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
16 Hb_086639_090 0.08058389 - - 60S ribosomal protein L7a, putative [Ricinus communis]
17 Hb_000283_110 0.0814402436 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
18 Hb_001814_050 0.0814659989 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_006541_010 0.0844518834 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
20 Hb_003893_050 0.0851041113 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000136_170 Hb_000136_170 Hb_002713_070 Hb_002713_070 Hb_000136_170--Hb_002713_070 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_001505_020 Hb_001505_020 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120 Hb_002660_030 Hb_002660_030 Hb_002713_070--Hb_002660_030 Hb_004375_100 Hb_004375_100 Hb_002713_070--Hb_004375_100 Hb_002713_070--Hb_001505_020 Hb_089839_020 Hb_089839_020 Hb_002713_070--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_002713_070--Hb_002925_030 Hb_000134_070--Hb_002660_030 Hb_003226_210 Hb_003226_210 Hb_000134_070--Hb_003226_210 Hb_004157_030 Hb_004157_030 Hb_000134_070--Hb_004157_030 Hb_086639_090 Hb_086639_090 Hb_000134_070--Hb_086639_090 Hb_000134_070--Hb_001505_020 Hb_006816_530 Hb_006816_530 Hb_001505_020--Hb_006816_530 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230 Hb_001814_050 Hb_001814_050 Hb_001505_020--Hb_001814_050 Hb_005357_130 Hb_005357_130 Hb_003623_050--Hb_005357_130 Hb_026048_070 Hb_026048_070 Hb_003623_050--Hb_026048_070 Hb_000086_550 Hb_000086_550 Hb_003623_050--Hb_000086_550 Hb_011644_030 Hb_011644_030 Hb_003623_050--Hb_011644_030 Hb_003623_050--Hb_001505_020 Hb_002798_020 Hb_002798_020 Hb_000265_050--Hb_002798_020 Hb_004127_020 Hb_004127_020 Hb_000265_050--Hb_004127_020 Hb_005063_050 Hb_005063_050 Hb_000265_050--Hb_005063_050 Hb_003893_050 Hb_003893_050 Hb_000265_050--Hb_003893_050 Hb_004459_040 Hb_004459_040 Hb_000265_050--Hb_004459_040 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_006478_150 Hb_006478_150 Hb_004567_120--Hb_006478_150 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_004567_120--Hb_011644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.864 2.55884 2.12624 3.99351 3.90597 7.14057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.11312 19.3865 7.3129 5.1297 3.48701

CAGE analysis