Hb_000136_180

Information

Type -
Description -
Location Contig136: 144242-144439
Sequence    

Annotation

kegg
ID rcu:RCOM_0687370
description ribosomal protein S28, putative
nr
ID XP_002520788.1
description ribosomal protein S28, putative [Ricinus communis]
swissprot
ID P34789
description 40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1
trembl
ID I3NML7
description 40S ribosomal protein S28A OS=Hevea brasiliensis GN=RPS28B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10009: 143546-144773
cDNA
(Sanger)
(ID:Location)		 034_K09.ab1: 143546-144661

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_180 0.0 - - ribosomal protein S28, putative [Ricinus communis]
2 Hb_007188_020 0.1352209688 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
3 Hb_002687_080 0.1371845524 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
4 Hb_112047_010 0.1490920277 - - -
5 Hb_000015_070 0.1491659952 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
6 Hb_076875_020 0.1495059649 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_001623_290 0.1571340232 - - unknown [Populus trichocarpa]
8 Hb_152554_010 0.1574489968 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
9 Hb_000074_060 0.1574514092 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
10 Hb_005367_010 0.1641305436 - - -
11 Hb_003371_170 0.164209146 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002192_090 0.165346855 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
13 Hb_019053_010 0.1683432056 - - -
14 Hb_099878_050 0.1684462916 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
15 Hb_133724_010 0.1705711332 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003861_040 0.1709795841 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
17 Hb_129672_010 0.1748026012 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
18 Hb_183557_010 0.1751216129 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
19 Hb_001396_250 0.1759333782 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
20 Hb_116632_010 0.1762183319 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000136_180 Hb_000136_180 Hb_007188_020 Hb_007188_020 Hb_000136_180--Hb_007188_020 Hb_002687_080 Hb_002687_080 Hb_000136_180--Hb_002687_080 Hb_112047_010 Hb_112047_010 Hb_000136_180--Hb_112047_010 Hb_000015_070 Hb_000015_070 Hb_000136_180--Hb_000015_070 Hb_076875_020 Hb_076875_020 Hb_000136_180--Hb_076875_020 Hb_001623_290 Hb_001623_290 Hb_000136_180--Hb_001623_290 Hb_152554_010 Hb_152554_010 Hb_007188_020--Hb_152554_010 Hb_116632_010 Hb_116632_010 Hb_007188_020--Hb_116632_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_000001_040 Hb_000001_040 Hb_007188_020--Hb_000001_040 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040 Hb_005085_030 Hb_005085_030 Hb_007188_020--Hb_005085_030 Hb_000416_070 Hb_000416_070 Hb_002687_080--Hb_000416_070 Hb_140291_010 Hb_140291_010 Hb_002687_080--Hb_140291_010 Hb_002687_080--Hb_152554_010 Hb_099878_050 Hb_099878_050 Hb_002687_080--Hb_099878_050 Hb_000327_290 Hb_000327_290 Hb_002687_080--Hb_000327_290 Hb_128998_010 Hb_128998_010 Hb_112047_010--Hb_128998_010 Hb_000429_250 Hb_000429_250 Hb_112047_010--Hb_000429_250 Hb_112047_010--Hb_001623_290 Hb_001623_300 Hb_001623_300 Hb_112047_010--Hb_001623_300 Hb_112047_010--Hb_000327_290 Hb_001396_250 Hb_001396_250 Hb_000015_070--Hb_001396_250 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_000015_070--Hb_012675_080 Hb_010565_010 Hb_010565_010 Hb_076875_020--Hb_010565_010 Hb_076875_020--Hb_152554_010 Hb_076875_020--Hb_000812_040 Hb_001135_140 Hb_001135_140 Hb_076875_020--Hb_001135_140 Hb_038237_010 Hb_038237_010 Hb_076875_020--Hb_038237_010 Hb_076875_020--Hb_007188_020 Hb_001623_290--Hb_001623_300 Hb_001623_290--Hb_000429_250 Hb_010964_020 Hb_010964_020 Hb_001623_290--Hb_010964_020 Hb_006663_090 Hb_006663_090 Hb_001623_290--Hb_006663_090 Hb_001623_290--Hb_002687_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.841 88.9258 150.099 622.393 91.4934 834.157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
149.67 423.272 85.9162 223.097 18.3221

CAGE analysis