Hb_000136_260

Information

Type -
Description -
Location Contig136: 224811-227717
Sequence    

Annotation

kegg
ID rcu:RCOM_0037210
description 40S ribosomal protein S5, putative
nr
ID ADR71286.1
description 40S ribosomal protein S5A [Hevea brasiliensis]
swissprot
ID O65731
description 40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1
trembl
ID I3NMP9
description 40S ribosomal protein S5A OS=Hevea brasiliensis GN=RPS5A PE=2 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10011: 224815-227648 , PASA_asmbl_10012: 224839-227648 , PASA_asmbl_10013: 224839-227694 , PASA_asmbl_10014: 225934-226227
cDNA
(Sanger)
(ID:Location)		 010_H21.ab1: 224815-227417 , 013_B20.ab1: 224847-227152 , 024_D03.ab1: 224813-226851 , 036_O15.ab1: 224812-227492 , 047_D19.ab1: 224815-227475 , 049_A06.ab1: 224812-227178 , 049_P12.ab1: 227095-227627 , 050_G22.ab1: 224848-227185

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_260 0.0 - - 40S ribosomal protein S5A [Hevea brasiliensis]
2 Hb_000538_120 0.0644024205 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
3 Hb_002078_140 0.0660194656 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
4 Hb_000099_150 0.0706082339 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
5 Hb_000419_020 0.0710614358 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000136_350 0.0722464875 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
7 Hb_004109_340 0.0730077341 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
8 Hb_000327_230 0.0738670281 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_000390_300 0.0752182555 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
10 Hb_007894_060 0.0769837902 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
11 Hb_001863_430 0.0790861916 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
12 Hb_007928_030 0.079138155 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
13 Hb_010423_030 0.0820980799 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
14 Hb_002811_170 0.0827053855 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
15 Hb_001341_150 0.0827735672 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
16 Hb_001278_100 0.0829875487 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
17 Hb_001931_010 0.0831686823 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
18 Hb_001691_140 0.0835170128 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
19 Hb_000312_080 0.0839919181 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
20 Hb_000431_170 0.0843561915 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]

Gene co-expression network

sample Hb_000136_260 Hb_000136_260 Hb_000538_120 Hb_000538_120 Hb_000136_260--Hb_000538_120 Hb_002078_140 Hb_002078_140 Hb_000136_260--Hb_002078_140 Hb_000099_150 Hb_000099_150 Hb_000136_260--Hb_000099_150 Hb_000419_020 Hb_000419_020 Hb_000136_260--Hb_000419_020 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_000136_260--Hb_004109_340 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000302_140 Hb_000302_140 Hb_000538_120--Hb_000302_140 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_001016_150 Hb_001016_150 Hb_002078_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_002078_140--Hb_001863_430 Hb_000099_150--Hb_001691_140 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_000099_150--Hb_002078_140 Hb_007747_050 Hb_007747_050 Hb_000419_020--Hb_007747_050 Hb_000155_160 Hb_000155_160 Hb_000419_020--Hb_000155_160 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_186982_040 Hb_186982_040 Hb_000136_350--Hb_186982_040 Hb_003098_020 Hb_003098_020 Hb_000136_350--Hb_003098_020 Hb_000136_350--Hb_000538_120 Hb_000377_120 Hb_000377_120 Hb_000136_350--Hb_000377_120 Hb_000136_350--Hb_000419_020 Hb_002042_150 Hb_002042_150 Hb_004109_340--Hb_002042_150 Hb_011628_060 Hb_011628_060 Hb_004109_340--Hb_011628_060 Hb_023001_040 Hb_023001_040 Hb_004109_340--Hb_023001_040 Hb_161574_020 Hb_161574_020 Hb_004109_340--Hb_161574_020 Hb_001189_070 Hb_001189_070 Hb_004109_340--Hb_001189_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.988 166.584 216.778 274.155 130.701 180.562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
232.577 502.391 196.533 266.743 150.101

CAGE analysis