Hb_000137_020

Information

Type -
Description -
Location Contig137: 44045-45187
Sequence    

Annotation

kegg
ID rcu:RCOM_0318140
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012085038.1
description PREDICTED: ras-related protein RABA5b [Jatropha curcas]
swissprot
ID Q9SRS5
description Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2 SV=1
trembl
ID A0A067L9Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15126 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba5b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10252: 43959-45198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000137_020 0.0 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
2 Hb_011161_020 0.1087034133 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
3 Hb_005551_020 0.1132427406 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
4 Hb_000574_420 0.113285642 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
5 Hb_001427_150 0.1149841528 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
6 Hb_009367_080 0.1170927772 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
7 Hb_014231_010 0.119664875 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
8 Hb_006185_060 0.1198620181 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
9 Hb_000941_030 0.1200076211 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
10 Hb_002903_140 0.1210971635 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
11 Hb_003047_020 0.1226841772 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
12 Hb_010417_070 0.1238225688 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
13 Hb_026198_060 0.124446695 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
14 Hb_069591_010 0.1246733177 - - -
15 Hb_000977_300 0.1253226839 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
16 Hb_005018_020 0.1257608034 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
17 Hb_005649_080 0.126456364 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_000703_200 0.126477307 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
19 Hb_085742_010 0.1271849489 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
20 Hb_004899_040 0.1283937342 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]

Gene co-expression network

sample Hb_000137_020 Hb_000137_020 Hb_011161_020 Hb_011161_020 Hb_000137_020--Hb_011161_020 Hb_005551_020 Hb_005551_020 Hb_000137_020--Hb_005551_020 Hb_000574_420 Hb_000574_420 Hb_000137_020--Hb_000574_420 Hb_001427_150 Hb_001427_150 Hb_000137_020--Hb_001427_150 Hb_009367_080 Hb_009367_080 Hb_000137_020--Hb_009367_080 Hb_014231_010 Hb_014231_010 Hb_000137_020--Hb_014231_010 Hb_011161_020--Hb_000574_420 Hb_006185_060 Hb_006185_060 Hb_011161_020--Hb_006185_060 Hb_003047_020 Hb_003047_020 Hb_011161_020--Hb_003047_020 Hb_009302_030 Hb_009302_030 Hb_011161_020--Hb_009302_030 Hb_004236_010 Hb_004236_010 Hb_011161_020--Hb_004236_010 Hb_000122_220 Hb_000122_220 Hb_011161_020--Hb_000122_220 Hb_001473_110 Hb_001473_110 Hb_005551_020--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_005551_020--Hb_000347_390 Hb_003768_050 Hb_003768_050 Hb_005551_020--Hb_003768_050 Hb_002234_090 Hb_002234_090 Hb_005551_020--Hb_002234_090 Hb_000347_400 Hb_000347_400 Hb_005551_020--Hb_000347_400 Hb_000024_040 Hb_000024_040 Hb_005551_020--Hb_000024_040 Hb_000574_420--Hb_006185_060 Hb_004032_040 Hb_004032_040 Hb_000574_420--Hb_004032_040 Hb_012368_100 Hb_012368_100 Hb_000574_420--Hb_012368_100 Hb_000347_120 Hb_000347_120 Hb_000574_420--Hb_000347_120 Hb_000941_030 Hb_000941_030 Hb_000574_420--Hb_000941_030 Hb_011249_060 Hb_011249_060 Hb_001427_150--Hb_011249_060 Hb_004899_040 Hb_004899_040 Hb_001427_150--Hb_004899_040 Hb_001427_150--Hb_009302_030 Hb_001488_040 Hb_001488_040 Hb_001427_150--Hb_001488_040 Hb_002928_190 Hb_002928_190 Hb_001427_150--Hb_002928_190 Hb_005765_040 Hb_005765_040 Hb_001427_150--Hb_005765_040 Hb_028472_010 Hb_028472_010 Hb_009367_080--Hb_028472_010 Hb_000037_220 Hb_000037_220 Hb_009367_080--Hb_000037_220 Hb_061878_010 Hb_061878_010 Hb_009367_080--Hb_061878_010 Hb_005563_060 Hb_005563_060 Hb_009367_080--Hb_005563_060 Hb_002375_110 Hb_002375_110 Hb_009367_080--Hb_002375_110 Hb_000256_020 Hb_000256_020 Hb_009367_080--Hb_000256_020 Hb_014231_010--Hb_000347_390 Hb_014231_010--Hb_001427_150 Hb_014231_010--Hb_005551_020 Hb_014231_010--Hb_003768_050 Hb_000703_200 Hb_000703_200 Hb_014231_010--Hb_000703_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65495 8.98825 6.45245 3.88886 1.68472 4.12626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48814 1.08969 4.60266 4.90271 4.20773

CAGE analysis