Hb_000137_040

Information

Type -
Description -
Location Contig137: 51581-55626
Sequence    

Annotation

kegg
ID rcu:RCOM_0318000
description aspartyl-tRNA synthetase, putative (EC:6.1.1.22)
nr
ID XP_002533054.1
description aspartyl-tRNA synthetase, putative [Ricinus communis]
swissprot
ID Q9SW95
description Asparagine--tRNA ligase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=1 SV=2
trembl
ID B9T485
description Aspartyl-tRNA synthetase, putative OS=Ricinus communis GN=RCOM_0318000 PE=4 SV=1
Gene Ontology
ID GO:0043231
description asparagine--trna cytoplasmic 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10254: 51751-55346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000137_040 0.0 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
2 Hb_003513_010 0.0494706996 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
3 Hb_002013_020 0.0658294919 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
4 Hb_005496_140 0.0725915553 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001322_110 0.0732837441 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003416_010 0.0740117705 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
7 Hb_000866_260 0.0764393993 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
8 Hb_002235_250 0.0772094578 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
9 Hb_004052_080 0.0781453832 - - conserved hypothetical protein [Ricinus communis]
10 Hb_022693_140 0.0786610407 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
11 Hb_000753_240 0.0794908315 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
12 Hb_014834_150 0.0795951013 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_007389_010 0.0816953025 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
14 Hb_003647_140 0.0817509529 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
15 Hb_000976_120 0.0822983553 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
16 Hb_001902_030 0.0823310124 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
17 Hb_004330_090 0.0832273503 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
18 Hb_001946_400 0.083629188 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
19 Hb_000869_020 0.0845278612 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
20 Hb_000465_090 0.0849827485 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]

Gene co-expression network

sample Hb_000137_040 Hb_000137_040 Hb_003513_010 Hb_003513_010 Hb_000137_040--Hb_003513_010 Hb_002013_020 Hb_002013_020 Hb_000137_040--Hb_002013_020 Hb_005496_140 Hb_005496_140 Hb_000137_040--Hb_005496_140 Hb_001322_110 Hb_001322_110 Hb_000137_040--Hb_001322_110 Hb_003416_010 Hb_003416_010 Hb_000137_040--Hb_003416_010 Hb_000866_260 Hb_000866_260 Hb_000137_040--Hb_000866_260 Hb_004052_080 Hb_004052_080 Hb_003513_010--Hb_004052_080 Hb_014834_150 Hb_014834_150 Hb_003513_010--Hb_014834_150 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003861_060 Hb_003861_060 Hb_003513_010--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_003513_010--Hb_007007_120 Hb_002013_020--Hb_004052_080 Hb_002013_020--Hb_003513_010 Hb_001456_060 Hb_001456_060 Hb_002013_020--Hb_001456_060 Hb_001163_050 Hb_001163_050 Hb_002013_020--Hb_001163_050 Hb_032202_140 Hb_032202_140 Hb_002013_020--Hb_032202_140 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_000375_350 Hb_000375_350 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_005496_140--Hb_003416_010 Hb_012799_170 Hb_012799_170 Hb_001322_110--Hb_012799_170 Hb_002408_020 Hb_002408_020 Hb_001322_110--Hb_002408_020 Hb_003124_150 Hb_003124_150 Hb_001322_110--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_001322_110--Hb_000811_070 Hb_000510_290 Hb_000510_290 Hb_001322_110--Hb_000510_290 Hb_008847_030 Hb_008847_030 Hb_003416_010--Hb_008847_030 Hb_002641_060 Hb_002641_060 Hb_003416_010--Hb_002641_060 Hb_003416_010--Hb_002863_050 Hb_003938_090 Hb_003938_090 Hb_003416_010--Hb_003938_090 Hb_001142_030 Hb_001142_030 Hb_003416_010--Hb_001142_030 Hb_000917_060 Hb_000917_060 Hb_000866_260--Hb_000917_060 Hb_007389_010 Hb_007389_010 Hb_000866_260--Hb_007389_010 Hb_017358_030 Hb_017358_030 Hb_000866_260--Hb_017358_030 Hb_000866_260--Hb_002013_020 Hb_000329_320 Hb_000329_320 Hb_000866_260--Hb_000329_320 Hb_000753_240 Hb_000753_240 Hb_000866_260--Hb_000753_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1748 7.19504 14.4088 10.4738 10.1806 10.9899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.37917 17.8161 11.5422 8.00022 15.5384

CAGE analysis