Hb_000138_040

Information

Type -
Description -
Location Contig138: 112123-114413
Sequence    

Annotation

kegg
ID rcu:RCOM_0504480
description rnf5, putative
nr
ID XP_012087783.1
description PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
swissprot
ID Q8GUK7
description E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1
trembl
ID A0A067JKY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25557 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10479: 112146-114249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_040 0.0 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
2 Hb_001817_180 0.0770121095 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
3 Hb_000358_080 0.077905542 - - Ribonuclease 3 [Gossypium arboreum]
4 Hb_000134_350 0.0806995238 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
5 Hb_009382_020 0.0817131708 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
6 Hb_029281_010 0.0917826604 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
7 Hb_001274_020 0.09312788 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
8 Hb_000608_120 0.093262155 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
9 Hb_002169_010 0.095674282 - - PREDICTED: la-related protein 6B [Jatropha curcas]
10 Hb_000490_030 0.1000179097 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
11 Hb_000172_400 0.1000551424 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_003581_140 0.1030159986 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
13 Hb_002249_140 0.1032012292 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
14 Hb_003747_240 0.1055835303 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
15 Hb_000784_090 0.1077350686 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
16 Hb_007943_080 0.1079309765 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
17 Hb_003861_080 0.108389314 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
18 Hb_000481_010 0.1088743823 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
19 Hb_000371_110 0.1089129687 - - -
20 Hb_003638_030 0.1092258888 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]

Gene co-expression network

sample Hb_000138_040 Hb_000138_040 Hb_001817_180 Hb_001817_180 Hb_000138_040--Hb_001817_180 Hb_000358_080 Hb_000358_080 Hb_000138_040--Hb_000358_080 Hb_000134_350 Hb_000134_350 Hb_000138_040--Hb_000134_350 Hb_009382_020 Hb_009382_020 Hb_000138_040--Hb_009382_020 Hb_029281_010 Hb_029281_010 Hb_000138_040--Hb_029281_010 Hb_001274_020 Hb_001274_020 Hb_000138_040--Hb_001274_020 Hb_001454_060 Hb_001454_060 Hb_001817_180--Hb_001454_060 Hb_001057_010 Hb_001057_010 Hb_001817_180--Hb_001057_010 Hb_001817_180--Hb_000358_080 Hb_001817_180--Hb_029281_010 Hb_000172_400 Hb_000172_400 Hb_001817_180--Hb_000172_400 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_000134_350--Hb_007943_080 Hb_000134_350--Hb_000358_080 Hb_003861_080 Hb_003861_080 Hb_000134_350--Hb_003861_080 Hb_000134_350--Hb_009382_020 Hb_000661_170 Hb_000661_170 Hb_000134_350--Hb_000661_170 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_029281_010--Hb_000490_030 Hb_011496_010 Hb_011496_010 Hb_029281_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_029281_010--Hb_005314_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180 Hb_000413_130 Hb_000413_130 Hb_029281_010--Hb_000413_130 Hb_015401_020 Hb_015401_020 Hb_001274_020--Hb_015401_020 Hb_000500_040 Hb_000500_040 Hb_001274_020--Hb_000500_040 Hb_001516_100 Hb_001516_100 Hb_001274_020--Hb_001516_100 Hb_000836_360 Hb_000836_360 Hb_001274_020--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001274_020--Hb_000808_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
293.309 132.882 15.6002 22.1869 248.078 242.531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
201.67 135.277 239.504 98.0789 19.4811

CAGE analysis