Hb_000138_110

Information

Type -
Description -
Location Contig138: 224151-227949
Sequence    

Annotation

kegg
ID rcu:RCOM_0503920
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012087769.1
description PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
swissprot
ID Q84JD5
description Probable protein phosphatase 2C 68 OS=Arabidopsis thaliana GN=At5g06750 PE=2 SV=1
trembl
ID A0A067JKX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25542 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10487: 224213-227737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_110 0.0 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
2 Hb_000092_010 0.0580495239 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
3 Hb_004079_030 0.0790661689 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
4 Hb_000258_270 0.0832977445 - - PREDICTED: cullin-3A [Jatropha curcas]
5 Hb_000629_120 0.0864845494 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
6 Hb_000096_010 0.0924700314 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
7 Hb_002027_040 0.0933665464 - - synapse-associated protein, putative [Ricinus communis]
8 Hb_000567_120 0.0937882348 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
9 Hb_004738_040 0.0960383616 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
10 Hb_000749_220 0.0987049581 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
11 Hb_003976_030 0.0987174686 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
12 Hb_006711_060 0.100011902 - - Tubulin beta-1 chain [Morus notabilis]
13 Hb_000161_060 0.1000884167 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
14 Hb_002105_040 0.1022532957 - - -
15 Hb_001811_030 0.1024996939 - - Beta-ureidopropionase, putative [Ricinus communis]
16 Hb_000836_040 0.1041645059 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_000063_140 0.1054331977 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
18 Hb_085863_030 0.1072771522 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
19 Hb_004052_090 0.1074679359 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
20 Hb_001959_190 0.1077584772 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000138_110 Hb_000138_110 Hb_000092_010 Hb_000092_010 Hb_000138_110--Hb_000092_010 Hb_004079_030 Hb_004079_030 Hb_000138_110--Hb_004079_030 Hb_000258_270 Hb_000258_270 Hb_000138_110--Hb_000258_270 Hb_000629_120 Hb_000629_120 Hb_000138_110--Hb_000629_120 Hb_000096_010 Hb_000096_010 Hb_000138_110--Hb_000096_010 Hb_002027_040 Hb_002027_040 Hb_000138_110--Hb_002027_040 Hb_003976_030 Hb_003976_030 Hb_000092_010--Hb_003976_030 Hb_007765_020 Hb_007765_020 Hb_000092_010--Hb_007765_020 Hb_012325_020 Hb_012325_020 Hb_000092_010--Hb_012325_020 Hb_000723_130 Hb_000723_130 Hb_000092_010--Hb_000723_130 Hb_000723_200 Hb_000723_200 Hb_000092_010--Hb_000723_200 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_000059_050 Hb_000059_050 Hb_004079_030--Hb_000059_050 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_119600_070 Hb_119600_070 Hb_004079_030--Hb_119600_070 Hb_004052_090 Hb_004052_090 Hb_000258_270--Hb_004052_090 Hb_000836_040 Hb_000836_040 Hb_000258_270--Hb_000836_040 Hb_000567_120 Hb_000567_120 Hb_000258_270--Hb_000567_120 Hb_001140_220 Hb_001140_220 Hb_000258_270--Hb_001140_220 Hb_000003_250 Hb_000003_250 Hb_000258_270--Hb_000003_250 Hb_016901_010 Hb_016901_010 Hb_000258_270--Hb_016901_010 Hb_000161_060 Hb_000161_060 Hb_000629_120--Hb_000161_060 Hb_000125_100 Hb_000125_100 Hb_000629_120--Hb_000125_100 Hb_092337_010 Hb_092337_010 Hb_000629_120--Hb_092337_010 Hb_000629_120--Hb_000567_120 Hb_001205_150 Hb_001205_150 Hb_000629_120--Hb_001205_150 Hb_000538_070 Hb_000538_070 Hb_000096_010--Hb_000538_070 Hb_000749_220 Hb_000749_220 Hb_000096_010--Hb_000749_220 Hb_000130_050 Hb_000130_050 Hb_000096_010--Hb_000130_050 Hb_003177_030 Hb_003177_030 Hb_000096_010--Hb_003177_030 Hb_002809_050 Hb_002809_050 Hb_000096_010--Hb_002809_050 Hb_002998_060 Hb_002998_060 Hb_000096_010--Hb_002998_060 Hb_005162_070 Hb_005162_070 Hb_002027_040--Hb_005162_070 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_000260_570 Hb_000260_570 Hb_002027_040--Hb_000260_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8569 8.70001 7.11334 15.8756 10.5702 14.4837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8498 18.2885 39.867 12.0584 10.336

CAGE analysis