Hb_000138_120

Information

Type -
Description -
Location Contig138: 235715-236293
Sequence    

Annotation

kegg
ID rcu:RCOM_0503810
description hypothetical protein
nr
ID XP_002530708.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXI9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0503810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006469_100 0.0494805101 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_000574_060 0.0495759098 - - hypothetical protein F775_19731 [Aegilops tauschii]
4 Hb_027802_030 0.0496692851 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
5 Hb_141016_010 0.0498130856 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
6 Hb_168078_010 0.0500059849 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
7 Hb_004375_090 0.0503523613 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
8 Hb_003363_100 0.0505531644 - - -
9 Hb_001104_030 0.0510744099 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
10 Hb_000506_060 0.0511000288 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
11 Hb_007524_020 0.052129518 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
12 Hb_001300_110 0.0528754929 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
13 Hb_009711_060 0.053245844 - - -
14 Hb_000243_270 0.0532498652 - - Pectinesterase-2 precursor, putative [Ricinus communis]
15 Hb_151697_010 0.0533435099 - - clathrin assembly protein, putative [Ricinus communis]
16 Hb_183658_010 0.0537679863 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
17 Hb_064476_010 0.0548711658 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
18 Hb_002106_020 0.0549961276 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
19 Hb_000556_210 0.0561764361 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
20 Hb_013607_020 0.0567192536 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000138_120 Hb_000138_120 Hb_006469_100 Hb_006469_100 Hb_000138_120--Hb_006469_100 Hb_000574_060 Hb_000574_060 Hb_000138_120--Hb_000574_060 Hb_027802_030 Hb_027802_030 Hb_000138_120--Hb_027802_030 Hb_141016_010 Hb_141016_010 Hb_000138_120--Hb_141016_010 Hb_168078_010 Hb_168078_010 Hb_000138_120--Hb_168078_010 Hb_004375_090 Hb_004375_090 Hb_000138_120--Hb_004375_090 Hb_006469_100--Hb_000574_060 Hb_006469_100--Hb_027802_030 Hb_006469_100--Hb_168078_010 Hb_003363_100 Hb_003363_100 Hb_006469_100--Hb_003363_100 Hb_006469_100--Hb_141016_010 Hb_000506_060 Hb_000506_060 Hb_006469_100--Hb_000506_060 Hb_000574_060--Hb_027802_030 Hb_000574_060--Hb_168078_010 Hb_000574_060--Hb_003363_100 Hb_000574_060--Hb_000506_060 Hb_000574_060--Hb_141016_010 Hb_027802_030--Hb_168078_010 Hb_027802_030--Hb_003363_100 Hb_027802_030--Hb_000506_060 Hb_027802_030--Hb_141016_010 Hb_141016_010--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_141016_010--Hb_001104_030 Hb_009711_060 Hb_009711_060 Hb_141016_010--Hb_009711_060 Hb_168078_010--Hb_003363_100 Hb_168078_010--Hb_000506_060 Hb_007524_020 Hb_007524_020 Hb_168078_010--Hb_007524_020 Hb_004375_090--Hb_001104_030 Hb_004375_090--Hb_009711_060 Hb_151697_010 Hb_151697_010 Hb_004375_090--Hb_151697_010 Hb_183658_010 Hb_183658_010 Hb_004375_090--Hb_183658_010 Hb_004375_090--Hb_006469_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.91353 4.63017 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.056581 0

CAGE analysis