Hb_000138_140

Information

Type -
Description -
Location Contig138: 264326-266533
Sequence    

Annotation

kegg
ID cic:CICLE_v10012551mg
description hypothetical protein
nr
ID KJB76682.1
description hypothetical protein B456_012G1014001, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2V4K0
description Gossypium raimondii chromosome 12, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_012G1014001 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna polymerase delta small subunit-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10491: 241397-266242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_140 0.0 - - hypothetical protein B456_012G1014001, partial [Gossypium raimondii]
2 Hb_019654_040 0.0761073262 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
3 Hb_000208_210 0.0781447086 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
4 Hb_002398_030 0.089492321 - - amino acid binding protein, putative [Ricinus communis]
5 Hb_003549_090 0.0910067905 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
6 Hb_004994_040 0.0936246364 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
7 Hb_001935_110 0.09448385 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
8 Hb_002272_130 0.09461504 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
9 Hb_001269_230 0.0958111996 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
10 Hb_000109_210 0.09883773 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_003638_090 0.0991546444 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
12 Hb_000470_070 0.0999140911 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
13 Hb_001488_200 0.1005952298 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
14 Hb_008120_030 0.1016325123 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
15 Hb_000351_120 0.1021359003 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
16 Hb_012053_080 0.1033853368 - - AP-2 complex subunit alpha, putative [Ricinus communis]
17 Hb_011174_090 0.1037098472 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
18 Hb_001030_110 0.1041928357 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 isoform X1 [Jatropha curcas]
19 Hb_011930_080 0.1049251979 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
20 Hb_000445_050 0.1052071706 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000138_140 Hb_000138_140 Hb_019654_040 Hb_019654_040 Hb_000138_140--Hb_019654_040 Hb_000208_210 Hb_000208_210 Hb_000138_140--Hb_000208_210 Hb_002398_030 Hb_002398_030 Hb_000138_140--Hb_002398_030 Hb_003549_090 Hb_003549_090 Hb_000138_140--Hb_003549_090 Hb_004994_040 Hb_004994_040 Hb_000138_140--Hb_004994_040 Hb_001935_110 Hb_001935_110 Hb_000138_140--Hb_001935_110 Hb_000470_070 Hb_000470_070 Hb_019654_040--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_019654_040--Hb_009296_010 Hb_019654_040--Hb_001935_110 Hb_000648_100 Hb_000648_100 Hb_019654_040--Hb_000648_100 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_000208_210--Hb_019654_040 Hb_000208_210--Hb_003549_090 Hb_001488_410 Hb_001488_410 Hb_000208_210--Hb_001488_410 Hb_000208_210--Hb_004994_040 Hb_001269_230 Hb_001269_230 Hb_000208_210--Hb_001269_230 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_002398_030--Hb_003549_090 Hb_058999_030 Hb_058999_030 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_003549_090--Hb_058999_030 Hb_011174_090 Hb_011174_090 Hb_004994_040--Hb_011174_090 Hb_007592_030 Hb_007592_030 Hb_004994_040--Hb_007592_030 Hb_000618_030 Hb_000618_030 Hb_004994_040--Hb_000618_030 Hb_002304_090 Hb_002304_090 Hb_004994_040--Hb_002304_090 Hb_001444_010 Hb_001444_010 Hb_004994_040--Hb_001444_010 Hb_009627_010 Hb_009627_010 Hb_004994_040--Hb_009627_010 Hb_012053_080 Hb_012053_080 Hb_001935_110--Hb_012053_080 Hb_001427_190 Hb_001427_190 Hb_001935_110--Hb_001427_190 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_001935_110--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_001935_110--Hb_002078_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.60817 5.26841 10.3975 5.87399 8.24168 14.9778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68784 3.6101 5.36767 7.10905 4.94596

CAGE analysis