Hb_000138_190

Information

Type -
Description -
Location Contig138: 339601-340752
Sequence    

Annotation

kegg
ID rcu:RCOM_0503360
description omega-6 desaturase, endoplasmic reticulum (EC:1.14.99.33)
nr
ID AAY87459.1
description omega-6 fatty acid desaturase [Hevea brasiliensis]
swissprot
ID P48631
description Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1
trembl
ID Q461Q1
description Omega-6 fatty acid desaturase OS=Hevea brasiliensis GN=FAD PE=2 SV=1
Gene Ontology
ID GO:0016717
description omega-6 fatty acid endoplasmic reticulum isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10498: 339323-344552 , PASA_asmbl_10503: 341013-341358 , PASA_asmbl_10504: 341419-341651
cDNA
(Sanger)
(ID:Location)		 012_O08.ab1: 340140-344444 , 037_A01.ab1: 340049-344440

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_190 0.0 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
2 Hb_002025_230 0.1128376243 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
3 Hb_007741_170 0.1246358821 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
4 Hb_005298_060 0.1302411175 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Malus domestica]
5 Hb_031042_040 0.1311713033 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
6 Hb_001195_110 0.1360996989 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
7 Hb_003636_090 0.1451077898 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
8 Hb_004738_090 0.1465165888 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002377_040 0.1468943784 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_000028_470 0.1478365441 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
11 Hb_000085_340 0.1481241251 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
12 Hb_002960_120 0.148910906 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
13 Hb_094437_070 0.1515583646 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
14 Hb_000062_230 0.1532921857 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
15 Hb_000065_070 0.1535686686 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
16 Hb_002388_060 0.1579398408 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005754_020 0.1587652091 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
18 Hb_001780_060 0.1624816729 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
19 Hb_001673_120 0.1625143004 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
20 Hb_002759_250 0.1635458474 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000138_190 Hb_000138_190 Hb_002025_230 Hb_002025_230 Hb_000138_190--Hb_002025_230 Hb_007741_170 Hb_007741_170 Hb_000138_190--Hb_007741_170 Hb_005298_060 Hb_005298_060 Hb_000138_190--Hb_005298_060 Hb_031042_040 Hb_031042_040 Hb_000138_190--Hb_031042_040 Hb_001195_110 Hb_001195_110 Hb_000138_190--Hb_001195_110 Hb_003636_090 Hb_003636_090 Hb_000138_190--Hb_003636_090 Hb_002025_230--Hb_001195_110 Hb_007786_010 Hb_007786_010 Hb_002025_230--Hb_007786_010 Hb_000062_230 Hb_000062_230 Hb_002025_230--Hb_000062_230 Hb_001846_060 Hb_001846_060 Hb_002025_230--Hb_001846_060 Hb_002377_040 Hb_002377_040 Hb_002025_230--Hb_002377_040 Hb_007741_170--Hb_005298_060 Hb_073973_170 Hb_073973_170 Hb_007741_170--Hb_073973_170 Hb_002307_050 Hb_002307_050 Hb_007741_170--Hb_002307_050 Hb_027380_040 Hb_027380_040 Hb_007741_170--Hb_027380_040 Hb_002078_430 Hb_002078_430 Hb_007741_170--Hb_002078_430 Hb_005298_060--Hb_027380_040 Hb_004738_090 Hb_004738_090 Hb_005298_060--Hb_004738_090 Hb_178968_150 Hb_178968_150 Hb_005298_060--Hb_178968_150 Hb_001140_160 Hb_001140_160 Hb_005298_060--Hb_001140_160 Hb_002955_030 Hb_002955_030 Hb_031042_040--Hb_002955_030 Hb_010174_130 Hb_010174_130 Hb_031042_040--Hb_010174_130 Hb_031042_040--Hb_002377_040 Hb_002716_150 Hb_002716_150 Hb_031042_040--Hb_002716_150 Hb_000085_340 Hb_000085_340 Hb_031042_040--Hb_000085_340 Hb_000034_140 Hb_000034_140 Hb_031042_040--Hb_000034_140 Hb_012807_120 Hb_012807_120 Hb_001195_110--Hb_012807_120 Hb_000365_350 Hb_000365_350 Hb_001195_110--Hb_000365_350 Hb_011316_030 Hb_011316_030 Hb_001195_110--Hb_011316_030 Hb_001140_080 Hb_001140_080 Hb_001195_110--Hb_001140_080 Hb_000138_010 Hb_000138_010 Hb_001195_110--Hb_000138_010 Hb_002875_090 Hb_002875_090 Hb_003636_090--Hb_002875_090 Hb_003636_090--Hb_004738_090 Hb_003636_090--Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_003636_090--Hb_002067_160 Hb_000997_260 Hb_000997_260 Hb_003636_090--Hb_000997_260 Hb_000270_400 Hb_000270_400 Hb_003636_090--Hb_000270_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1624.08 25.4215 245.608 67.8567 692.975 834.648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
767.103 239.073 515.644 64.4296 107.332

CAGE analysis