Hb_000139_110

Information

Type -
Description -
Location Contig139: 146555-148813
Sequence    

Annotation

kegg
ID rcu:RCOM_0914030
description Mavicyanin, putative
nr
ID XP_012069595.1
description PREDICTED: mavicyanin [Jatropha curcas]
swissprot
ID P80728
description Mavicyanin OS=Cucurbita pepo PE=1 SV=1
trembl
ID A0A067L7U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02152 PE=4 SV=1
Gene Ontology
ID GO:0009055
description plastocyanin-like domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10622: 146575-149013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_110 0.0 - - PREDICTED: mavicyanin [Jatropha curcas]
2 Hb_001486_050 0.1854529374 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
3 Hb_000500_070 0.1941346682 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
4 Hb_006816_110 0.2077139569 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
5 Hb_034507_040 0.2218659733 - - peptide transporter, putative [Ricinus communis]
6 Hb_003713_010 0.2243100083 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005293_020 0.2293126922 - - conserved hypothetical protein [Ricinus communis]
8 Hb_099990_020 0.2430270633 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
9 Hb_000172_470 0.2452349038 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
10 Hb_000281_060 0.2489563062 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_003623_040 0.2532282075 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
12 Hb_000893_010 0.2533930012 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
13 Hb_000359_300 0.2540859476 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
14 Hb_000049_080 0.2556976724 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_004525_080 0.263812206 - - Sugar transporter ERD6-like 6 [Morus notabilis]
16 Hb_054865_160 0.2741968824 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
17 Hb_001059_140 0.278019225 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
18 Hb_001454_080 0.2788630688 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
19 Hb_000226_070 0.2789367833 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
20 Hb_000521_070 0.2793501424 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_110 Hb_000139_110 Hb_001486_050 Hb_001486_050 Hb_000139_110--Hb_001486_050 Hb_000500_070 Hb_000500_070 Hb_000139_110--Hb_000500_070 Hb_006816_110 Hb_006816_110 Hb_000139_110--Hb_006816_110 Hb_034507_040 Hb_034507_040 Hb_000139_110--Hb_034507_040 Hb_003713_010 Hb_003713_010 Hb_000139_110--Hb_003713_010 Hb_005293_020 Hb_005293_020 Hb_000139_110--Hb_005293_020 Hb_184541_010 Hb_184541_010 Hb_001486_050--Hb_184541_010 Hb_007741_090 Hb_007741_090 Hb_001486_050--Hb_007741_090 Hb_004525_080 Hb_004525_080 Hb_001486_050--Hb_004525_080 Hb_007575_090 Hb_007575_090 Hb_001486_050--Hb_007575_090 Hb_001486_050--Hb_006816_110 Hb_000172_470 Hb_000172_470 Hb_000500_070--Hb_000172_470 Hb_000500_070--Hb_006816_110 Hb_005357_170 Hb_005357_170 Hb_000500_070--Hb_005357_170 Hb_001741_110 Hb_001741_110 Hb_000500_070--Hb_001741_110 Hb_000500_070--Hb_001486_050 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_080081_010 Hb_080081_010 Hb_006816_110--Hb_080081_010 Hb_000521_070 Hb_000521_070 Hb_006816_110--Hb_000521_070 Hb_006816_110--Hb_000172_470 Hb_188313_010 Hb_188313_010 Hb_034507_040--Hb_188313_010 Hb_000311_040 Hb_000311_040 Hb_034507_040--Hb_000311_040 Hb_054865_160 Hb_054865_160 Hb_034507_040--Hb_054865_160 Hb_001217_010 Hb_001217_010 Hb_034507_040--Hb_001217_010 Hb_011287_040 Hb_011287_040 Hb_034507_040--Hb_011287_040 Hb_001247_030 Hb_001247_030 Hb_034507_040--Hb_001247_030 Hb_003713_010--Hb_000500_070 Hb_001232_060 Hb_001232_060 Hb_003713_010--Hb_001232_060 Hb_000815_220 Hb_000815_220 Hb_003713_010--Hb_000815_220 Hb_067118_010 Hb_067118_010 Hb_003713_010--Hb_067118_010 Hb_000160_010 Hb_000160_010 Hb_003713_010--Hb_000160_010 Hb_002217_280 Hb_002217_280 Hb_005293_020--Hb_002217_280 Hb_000281_060 Hb_000281_060 Hb_005293_020--Hb_000281_060 Hb_005293_020--Hb_034507_040 Hb_000226_070 Hb_000226_070 Hb_005293_020--Hb_000226_070 Hb_024074_020 Hb_024074_020 Hb_005293_020--Hb_024074_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.37904 0.562931 1.65206 28.8997 3.02033 4.37218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.307502 0.0805548 0.281355 0.0661105 4.3579

CAGE analysis