Hb_000139_140

Information

Type -
Description -
Location Contig139: 162490-172669
Sequence    

Annotation

kegg
ID rcu:RCOM_0914000
description Acyl-CoA synthetase (EC:6.2.1.3)
nr
ID XP_002517212.1
description Acyl-CoA synthetase [Ricinus communis]
swissprot
ID Q8LKS5
description Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2
trembl
ID A1X860
description ACS2 OS=Ricinus communis GN=RCOM_0914000 PE=2 SV=1
Gene Ontology
ID GO:0003824
description long chain acyl- synthetase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_140 0.0 - - Acyl-CoA synthetase [Ricinus communis]
2 Hb_000220_110 0.0910716298 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
3 Hb_003227_010 0.1136057889 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
4 Hb_001014_190 0.1255194899 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
5 Hb_004495_020 0.1273212547 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_000009_140 0.1294492353 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
7 Hb_009646_010 0.1329804626 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
8 Hb_128589_010 0.133062803 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_003683_130 0.133780347 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
10 Hb_001616_070 0.1359946364 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
11 Hb_003710_020 0.1363982051 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
12 Hb_000683_050 0.1367025558 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
13 Hb_000258_090 0.1368423943 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
14 Hb_001341_200 0.1383991987 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
15 Hb_019863_030 0.1411781445 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
16 Hb_004883_020 0.1417163339 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
17 Hb_003607_060 0.1427894274 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
18 Hb_010872_040 0.1430860107 - - hypothetical protein F775_31993 [Aegilops tauschii]
19 Hb_005504_030 0.1440051798 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
20 Hb_000144_120 0.1459274558 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000139_140 Hb_000139_140 Hb_000220_110 Hb_000220_110 Hb_000139_140--Hb_000220_110 Hb_003227_010 Hb_003227_010 Hb_000139_140--Hb_003227_010 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_004495_020 Hb_004495_020 Hb_000139_140--Hb_004495_020 Hb_000009_140 Hb_000009_140 Hb_000139_140--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000139_140--Hb_009646_010 Hb_001616_070 Hb_001616_070 Hb_000220_110--Hb_001616_070 Hb_000220_110--Hb_003227_010 Hb_000172_280 Hb_000172_280 Hb_000220_110--Hb_000172_280 Hb_000683_050 Hb_000683_050 Hb_000220_110--Hb_000683_050 Hb_003683_130 Hb_003683_130 Hb_000220_110--Hb_003683_130 Hb_010872_040 Hb_010872_040 Hb_003227_010--Hb_010872_040 Hb_000235_050 Hb_000235_050 Hb_003227_010--Hb_000235_050 Hb_005970_010 Hb_005970_010 Hb_003227_010--Hb_005970_010 Hb_002808_020 Hb_002808_020 Hb_003227_010--Hb_002808_020 Hb_029510_100 Hb_029510_100 Hb_001014_190--Hb_029510_100 Hb_001014_190--Hb_005970_010 Hb_004330_080 Hb_004330_080 Hb_001014_190--Hb_004330_080 Hb_006683_020 Hb_006683_020 Hb_001014_190--Hb_006683_020 Hb_001014_190--Hb_000683_050 Hb_019280_020 Hb_019280_020 Hb_001014_190--Hb_019280_020 Hb_001341_200 Hb_001341_200 Hb_004495_020--Hb_001341_200 Hb_029584_090 Hb_029584_090 Hb_004495_020--Hb_029584_090 Hb_003607_060 Hb_003607_060 Hb_004495_020--Hb_003607_060 Hb_005181_180 Hb_005181_180 Hb_004495_020--Hb_005181_180 Hb_002026_080 Hb_002026_080 Hb_004495_020--Hb_002026_080 Hb_005504_030 Hb_005504_030 Hb_000009_140--Hb_005504_030 Hb_004586_240 Hb_004586_240 Hb_000009_140--Hb_004586_240 Hb_033363_010 Hb_033363_010 Hb_000009_140--Hb_033363_010 Hb_000072_020 Hb_000072_020 Hb_000009_140--Hb_000072_020 Hb_000009_140--Hb_009646_010 Hb_010068_070 Hb_010068_070 Hb_000009_140--Hb_010068_070 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_000110_300 Hb_000110_300 Hb_009646_010--Hb_000110_300 Hb_009646_010--Hb_001341_200 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_128589_010 Hb_128589_010 Hb_009646_010--Hb_128589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.631786 2.55635 2.87523 4.69176 0.336247 0.470774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.865068 0.756364 1.20374 5.29294 1.44979

CAGE analysis