Hb_000139_160

Information

Type -
Description -
Location Contig139: 184829-185857
Sequence    

Annotation

kegg
ID rcu:RCOM_0913980
description hypothetical protein
nr
ID XP_002517210.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3E936
description Probable membrane-associated kinase regulator 1 OS=Arabidopsis thaliana GN=MAKR1 PE=1 SV=1
trembl
ID B9RTZ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0913980 PE=4 SV=1
Gene Ontology
ID GO:0019210
description probable membrane-associated kinase regulator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10625: 185102-185443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000009_370 0.2940514145 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
3 Hb_028621_030 0.2974300724 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
4 Hb_007213_020 0.3086530092 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
5 Hb_007853_020 0.3227282306 - - protein BOLA2 [Jatropha curcas]
6 Hb_022680_020 0.3278454944 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
7 Hb_000522_070 0.3302989959 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
8 Hb_153258_060 0.333875979 - - -
9 Hb_002387_140 0.3409884321 - - PREDICTED: serine/threonine-protein kinase At5g01020-like [Jatropha curcas]
10 Hb_001195_300 0.3487660493 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
11 Hb_104034_010 0.3526312677 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Pyrus x bretschneideri]
12 Hb_000345_130 0.3532457756 - - unnamed protein product [Coffea canephora]
13 Hb_001507_080 0.3574372379 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
14 Hb_002307_020 0.3604007202 - - PREDICTED: histone H1-like [Jatropha curcas]
15 Hb_001709_100 0.3663265821 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_001722_090 0.3665090212 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
17 Hb_002979_030 0.3669316182 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
18 Hb_180924_010 0.3673486823 - - CPI-4 [Morus alba var. atropurpurea]
19 Hb_036790_030 0.3711002517 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
20 Hb_000051_080 0.3738237934 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_160 Hb_000139_160 Hb_000009_370 Hb_000009_370 Hb_000139_160--Hb_000009_370 Hb_028621_030 Hb_028621_030 Hb_000139_160--Hb_028621_030 Hb_007213_020 Hb_007213_020 Hb_000139_160--Hb_007213_020 Hb_007853_020 Hb_007853_020 Hb_000139_160--Hb_007853_020 Hb_022680_020 Hb_022680_020 Hb_000139_160--Hb_022680_020 Hb_000522_070 Hb_000522_070 Hb_000139_160--Hb_000522_070 Hb_000009_370--Hb_028621_030 Hb_000429_210 Hb_000429_210 Hb_000009_370--Hb_000429_210 Hb_011316_070 Hb_011316_070 Hb_000009_370--Hb_011316_070 Hb_003750_100 Hb_003750_100 Hb_000009_370--Hb_003750_100 Hb_180924_010 Hb_180924_010 Hb_000009_370--Hb_180924_010 Hb_008453_120 Hb_008453_120 Hb_000009_370--Hb_008453_120 Hb_028621_030--Hb_000429_210 Hb_028621_030--Hb_011316_070 Hb_028621_030--Hb_003750_100 Hb_028621_030--Hb_180924_010 Hb_028621_030--Hb_008453_120 Hb_005116_030 Hb_005116_030 Hb_007213_020--Hb_005116_030 Hb_002387_140 Hb_002387_140 Hb_007213_020--Hb_002387_140 Hb_027445_070 Hb_027445_070 Hb_007213_020--Hb_027445_070 Hb_036182_010 Hb_036182_010 Hb_007213_020--Hb_036182_010 Hb_010369_020 Hb_010369_020 Hb_007213_020--Hb_010369_020 Hb_000621_100 Hb_000621_100 Hb_007213_020--Hb_000621_100 Hb_002450_150 Hb_002450_150 Hb_007853_020--Hb_002450_150 Hb_007853_020--Hb_000429_210 Hb_007853_020--Hb_007213_020 Hb_183612_020 Hb_183612_020 Hb_007853_020--Hb_183612_020 Hb_007951_080 Hb_007951_080 Hb_007853_020--Hb_007951_080 Hb_007223_020 Hb_007223_020 Hb_007853_020--Hb_007223_020 Hb_004491_020 Hb_004491_020 Hb_022680_020--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_022680_020--Hb_000264_150 Hb_001722_090 Hb_001722_090 Hb_022680_020--Hb_001722_090 Hb_001709_100 Hb_001709_100 Hb_022680_020--Hb_001709_100 Hb_001247_340 Hb_001247_340 Hb_022680_020--Hb_001247_340 Hb_162189_010 Hb_162189_010 Hb_022680_020--Hb_162189_010 Hb_000367_240 Hb_000367_240 Hb_000522_070--Hb_000367_240 Hb_001454_180 Hb_001454_180 Hb_000522_070--Hb_001454_180 Hb_000748_100 Hb_000748_100 Hb_000522_070--Hb_000748_100 Hb_007558_110 Hb_007558_110 Hb_000522_070--Hb_007558_110 Hb_000739_250 Hb_000739_250 Hb_000522_070--Hb_000739_250 Hb_000083_110 Hb_000083_110 Hb_000522_070--Hb_000083_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.128849 0.0182722 0.0200243 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0489096 0 0 0.0154594 0

CAGE analysis