Hb_000139_170

Information

Type -
Description -
Location Contig139: 197927-198655
Sequence    

Annotation

kegg
ID rcu:RCOM_0913970
description hypothetical protein
nr
ID XP_012069585.1
description PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02145 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_170 0.0 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
2 Hb_001775_020 0.0128056535 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_001295_070 0.0218654914 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
4 Hb_005743_050 0.0241488274 - - unnamed protein product [Coffea canephora]
5 Hb_000844_080 0.024391653 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
6 Hb_009707_020 0.0382246352 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
7 Hb_001507_060 0.0399570509 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
8 Hb_002014_150 0.0458151573 - - monooxygenase, putative [Ricinus communis]
9 Hb_002328_080 0.0464809632 - - short-chain dehydrogenase, putative [Ricinus communis]
10 Hb_163566_020 0.0488664496 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000987_030 0.0489132126 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
12 Hb_000703_340 0.0496669691 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
13 Hb_000010_160 0.0499746134 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
14 Hb_158001_010 0.0515528882 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
15 Hb_011382_010 0.055035962 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
16 Hb_007187_010 0.0576913037 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
17 Hb_001936_100 0.0583227398 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000251_150 0.0610775895 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
19 Hb_074312_010 0.063577066 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
20 Hb_000179_010 0.0665544976 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000139_170 Hb_000139_170 Hb_001775_020 Hb_001775_020 Hb_000139_170--Hb_001775_020 Hb_001295_070 Hb_001295_070 Hb_000139_170--Hb_001295_070 Hb_005743_050 Hb_005743_050 Hb_000139_170--Hb_005743_050 Hb_000844_080 Hb_000844_080 Hb_000139_170--Hb_000844_080 Hb_009707_020 Hb_009707_020 Hb_000139_170--Hb_009707_020 Hb_001507_060 Hb_001507_060 Hb_000139_170--Hb_001507_060 Hb_001775_020--Hb_000844_080 Hb_001775_020--Hb_001295_070 Hb_001775_020--Hb_001507_060 Hb_001775_020--Hb_009707_020 Hb_001775_020--Hb_005743_050 Hb_001295_070--Hb_000844_080 Hb_001295_070--Hb_001507_060 Hb_001295_070--Hb_005743_050 Hb_002328_080 Hb_002328_080 Hb_001295_070--Hb_002328_080 Hb_000987_030 Hb_000987_030 Hb_005743_050--Hb_000987_030 Hb_158001_010 Hb_158001_010 Hb_005743_050--Hb_158001_010 Hb_000251_150 Hb_000251_150 Hb_005743_050--Hb_000251_150 Hb_000844_080--Hb_001507_060 Hb_000844_080--Hb_009707_020 Hb_000844_080--Hb_002328_080 Hb_009707_020--Hb_002328_080 Hb_011382_010 Hb_011382_010 Hb_009707_020--Hb_011382_010 Hb_007187_010 Hb_007187_010 Hb_009707_020--Hb_007187_010 Hb_000010_160 Hb_000010_160 Hb_009707_020--Hb_000010_160 Hb_001507_060--Hb_002328_080 Hb_001507_060--Hb_009707_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.207974 0.116083 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.358562

CAGE analysis