Hb_000139_180

Information

Type -
Description -
Location Contig139: 199891-205326
Sequence    

Annotation

kegg
ID rcu:RCOM_0913960
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012069584.1
description PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
swissprot
ID Q9ZQQ7
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=3 SV=1
trembl
ID A0A067KVA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02144 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable lrr receptor-like serine threonine-protein kinase at1g67720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10627: 203984-204930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_180 0.0 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
2 Hb_000671_060 0.1222683509 - - protein binding protein, putative [Ricinus communis]
3 Hb_020805_100 0.1317646713 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
4 Hb_012038_010 0.1365961747 - - phospholipid-transporting atpase, putative [Ricinus communis]
5 Hb_000732_070 0.1423115796 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_001911_010 0.1454073649 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_000334_130 0.1520582731 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
8 Hb_003090_150 0.1529560676 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
9 Hb_002400_230 0.1529873063 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
10 Hb_003001_040 0.1538261725 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
11 Hb_007031_040 0.1552139128 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
12 Hb_001369_780 0.1571052897 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004324_060 0.1576636244 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
14 Hb_000991_050 0.1583929469 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
15 Hb_000027_180 0.158749091 - - PREDICTED: uncharacterized protein LOC105642058 [Jatropha curcas]
16 Hb_004800_240 0.1588367942 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
17 Hb_001079_030 0.1592127807 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
18 Hb_003090_160 0.1604452697 - - -
19 Hb_002311_140 0.1617521055 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
20 Hb_000853_220 0.1631066102 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_180 Hb_000139_180 Hb_000671_060 Hb_000671_060 Hb_000139_180--Hb_000671_060 Hb_020805_100 Hb_020805_100 Hb_000139_180--Hb_020805_100 Hb_012038_010 Hb_012038_010 Hb_000139_180--Hb_012038_010 Hb_000732_070 Hb_000732_070 Hb_000139_180--Hb_000732_070 Hb_001911_010 Hb_001911_010 Hb_000139_180--Hb_001911_010 Hb_000334_130 Hb_000334_130 Hb_000139_180--Hb_000334_130 Hb_003090_150 Hb_003090_150 Hb_000671_060--Hb_003090_150 Hb_000163_230 Hb_000163_230 Hb_000671_060--Hb_000163_230 Hb_002311_140 Hb_002311_140 Hb_000671_060--Hb_002311_140 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_001196_080 Hb_001196_080 Hb_000671_060--Hb_001196_080 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280 Hb_020805_100--Hb_000732_070 Hb_020805_100--Hb_000671_060 Hb_003895_020 Hb_003895_020 Hb_020805_100--Hb_003895_020 Hb_003001_040 Hb_003001_040 Hb_020805_100--Hb_003001_040 Hb_006022_010 Hb_006022_010 Hb_020805_100--Hb_006022_010 Hb_152910_010 Hb_152910_010 Hb_020805_100--Hb_152910_010 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_012038_010--Hb_003895_020 Hb_002942_110 Hb_002942_110 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060 Hb_000086_050 Hb_000086_050 Hb_000732_070--Hb_000086_050 Hb_000732_070--Hb_003895_020 Hb_002400_230 Hb_002400_230 Hb_000732_070--Hb_002400_230 Hb_000732_070--Hb_000334_130 Hb_006573_160 Hb_006573_160 Hb_000732_070--Hb_006573_160 Hb_159295_010 Hb_159295_010 Hb_001911_010--Hb_159295_010 Hb_007031_040 Hb_007031_040 Hb_001911_010--Hb_007031_040 Hb_002248_120 Hb_002248_120 Hb_001911_010--Hb_002248_120 Hb_001410_130 Hb_001410_130 Hb_001911_010--Hb_001410_130 Hb_000421_110 Hb_000421_110 Hb_001911_010--Hb_000421_110 Hb_005403_010 Hb_005403_010 Hb_001911_010--Hb_005403_010 Hb_001221_090 Hb_001221_090 Hb_000334_130--Hb_001221_090 Hb_002092_070 Hb_002092_070 Hb_000334_130--Hb_002092_070 Hb_002027_280 Hb_002027_280 Hb_000334_130--Hb_002027_280 Hb_001454_170 Hb_001454_170 Hb_000334_130--Hb_001454_170 Hb_004429_010 Hb_004429_010 Hb_000334_130--Hb_004429_010 Hb_000352_070 Hb_000352_070 Hb_000334_130--Hb_000352_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33354 11.1362 5.96375 6.77307 6.32593 1.90967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.730099 0.957414 1.26848 1.7457 4.28063

CAGE analysis