Hb_000139_190

Information

Type transcription factor
Description TF Family: TRAF
Location Contig139: 217175-227439
Sequence    

Annotation

kegg
ID tcc:TCM_020571
description ARM repeat protein interacting with ABF2 isoform 1
nr
ID XP_012069583.1
description PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
swissprot
ID B9DHT4
description ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2
trembl
ID A0A067L6L9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02143 PE=4 SV=1
Gene Ontology
ID GO:0005515
description arm repeat protein interacting with abf2 isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10628: 217458-227573 , PASA_asmbl_10629: 225340-225667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_190 0.0 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
2 Hb_027073_030 0.0741547857 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
3 Hb_010998_040 0.0763425878 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
4 Hb_039605_010 0.0779254529 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
5 Hb_032264_060 0.0785943761 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
6 Hb_010362_030 0.0799051694 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
7 Hb_000287_050 0.0799486247 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
8 Hb_001005_020 0.0800580311 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
9 Hb_007290_030 0.0847875855 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
10 Hb_143766_110 0.0853044498 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
11 Hb_005288_080 0.0893305838 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001776_060 0.0899882937 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
13 Hb_000983_120 0.0916016106 - - cyclin-dependent protein kinase, putative [Ricinus communis]
14 Hb_000525_100 0.09171643 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
15 Hb_014361_150 0.0922668906 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
16 Hb_003292_050 0.0924199261 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
17 Hb_000023_320 0.093087668 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001636_050 0.0935060303 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
19 Hb_000352_350 0.0938414484 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
20 Hb_002928_010 0.0939578593 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_190 Hb_000139_190 Hb_027073_030 Hb_027073_030 Hb_000139_190--Hb_027073_030 Hb_010998_040 Hb_010998_040 Hb_000139_190--Hb_010998_040 Hb_039605_010 Hb_039605_010 Hb_000139_190--Hb_039605_010 Hb_032264_060 Hb_032264_060 Hb_000139_190--Hb_032264_060 Hb_010362_030 Hb_010362_030 Hb_000139_190--Hb_010362_030 Hb_000287_050 Hb_000287_050 Hb_000139_190--Hb_000287_050 Hb_002928_010 Hb_002928_010 Hb_027073_030--Hb_002928_010 Hb_003579_050 Hb_003579_050 Hb_027073_030--Hb_003579_050 Hb_027073_030--Hb_039605_010 Hb_004128_200 Hb_004128_200 Hb_027073_030--Hb_004128_200 Hb_000576_050 Hb_000576_050 Hb_027073_030--Hb_000576_050 Hb_001804_110 Hb_001804_110 Hb_010998_040--Hb_001804_110 Hb_001140_030 Hb_001140_030 Hb_010998_040--Hb_001140_030 Hb_000959_230 Hb_000959_230 Hb_010998_040--Hb_000959_230 Hb_010998_040--Hb_010362_030 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_039605_010--Hb_002928_010 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_039605_010--Hb_000287_050 Hb_003994_140 Hb_003994_140 Hb_039605_010--Hb_003994_140 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330 Hb_000803_070 Hb_000803_070 Hb_032264_060--Hb_000803_070 Hb_003633_070 Hb_003633_070 Hb_032264_060--Hb_003633_070 Hb_003927_040 Hb_003927_040 Hb_032264_060--Hb_003927_040 Hb_032264_060--Hb_001140_030 Hb_001751_140 Hb_001751_140 Hb_032264_060--Hb_001751_140 Hb_001754_030 Hb_001754_030 Hb_032264_060--Hb_001754_030 Hb_001405_190 Hb_001405_190 Hb_010362_030--Hb_001405_190 Hb_143766_110 Hb_143766_110 Hb_010362_030--Hb_143766_110 Hb_000567_190 Hb_000567_190 Hb_010362_030--Hb_000567_190 Hb_010362_030--Hb_001140_030 Hb_000287_050--Hb_011249_030 Hb_065755_030 Hb_065755_030 Hb_000287_050--Hb_065755_030 Hb_000287_050--Hb_002928_010 Hb_008921_010 Hb_008921_010 Hb_000287_050--Hb_008921_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.128 47.9282 64.9821 24.9815 41.908 27.324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7819 20.7481 22.655 17.4464 23.3264

CAGE analysis