Hb_000139_200

Information

Type -
Description -
Location Contig139: 230252-236399
Sequence    

Annotation

kegg
ID fve:101304570
description uncharacterized protein LOC101304570
nr
ID XP_002517206.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q5NUF4
description 2-hydroxyisoflavanone dehydratase OS=Glycyrrhiza echinata GN=HIDM PE=1 SV=1
trembl
ID B9RTY7
description Catalytic, putative OS=Ricinus communis GN=RCOM_0913940 PE=4 SV=1
Gene Ontology
ID GO:0016787
description 2-hydroxyisoflavanone dehydratase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10631: 234692-235055 , PASA_asmbl_10632: 235089-235398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_200 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_162286_020 0.1869900585 - - PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]
3 Hb_000310_080 0.1988145279 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
4 Hb_010560_060 0.2007692536 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
5 Hb_000317_330 0.2014300288 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
6 Hb_000684_300 0.2020451501 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
7 Hb_055773_010 0.2032164493 - - -
8 Hb_002804_050 0.2054336374 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
9 Hb_000029_160 0.2062192668 - - Nitrilase, putative [Ricinus communis]
10 Hb_001769_010 0.2072675221 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010128_090 0.2089686022 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
12 Hb_007416_200 0.2100942752 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
13 Hb_002893_020 0.2101388615 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
14 Hb_002043_180 0.2134981667 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
15 Hb_003106_150 0.2142106077 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
16 Hb_005333_020 0.2146819164 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
17 Hb_000373_270 0.2169934912 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
18 Hb_004324_340 0.2176865098 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000086_580 0.2183888224 - - ring finger protein, putative [Ricinus communis]
20 Hb_000186_040 0.2190382682 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000139_200 Hb_000139_200 Hb_162286_020 Hb_162286_020 Hb_000139_200--Hb_162286_020 Hb_000310_080 Hb_000310_080 Hb_000139_200--Hb_000310_080 Hb_010560_060 Hb_010560_060 Hb_000139_200--Hb_010560_060 Hb_000317_330 Hb_000317_330 Hb_000139_200--Hb_000317_330 Hb_000684_300 Hb_000684_300 Hb_000139_200--Hb_000684_300 Hb_055773_010 Hb_055773_010 Hb_000139_200--Hb_055773_010 Hb_000365_260 Hb_000365_260 Hb_162286_020--Hb_000365_260 Hb_002276_050 Hb_002276_050 Hb_162286_020--Hb_002276_050 Hb_001474_030 Hb_001474_030 Hb_162286_020--Hb_001474_030 Hb_007305_010 Hb_007305_010 Hb_162286_020--Hb_007305_010 Hb_003064_030 Hb_003064_030 Hb_162286_020--Hb_003064_030 Hb_004678_060 Hb_004678_060 Hb_162286_020--Hb_004678_060 Hb_003020_110 Hb_003020_110 Hb_000310_080--Hb_003020_110 Hb_027405_020 Hb_027405_020 Hb_000310_080--Hb_027405_020 Hb_000029_160 Hb_000029_160 Hb_000310_080--Hb_000029_160 Hb_010128_090 Hb_010128_090 Hb_000310_080--Hb_010128_090 Hb_000032_320 Hb_000032_320 Hb_000310_080--Hb_000032_320 Hb_000373_270 Hb_000373_270 Hb_000310_080--Hb_000373_270 Hb_000098_020 Hb_000098_020 Hb_010560_060--Hb_000098_020 Hb_116349_160 Hb_116349_160 Hb_010560_060--Hb_116349_160 Hb_028358_010 Hb_028358_010 Hb_010560_060--Hb_028358_010 Hb_007803_060 Hb_007803_060 Hb_010560_060--Hb_007803_060 Hb_002111_060 Hb_002111_060 Hb_010560_060--Hb_002111_060 Hb_000563_600 Hb_000563_600 Hb_010560_060--Hb_000563_600 Hb_000317_330--Hb_000373_270 Hb_001341_030 Hb_001341_030 Hb_000317_330--Hb_001341_030 Hb_000920_040 Hb_000920_040 Hb_000317_330--Hb_000920_040 Hb_000078_180 Hb_000078_180 Hb_000317_330--Hb_000078_180 Hb_004218_150 Hb_004218_150 Hb_000317_330--Hb_004218_150 Hb_000032_620 Hb_000032_620 Hb_000317_330--Hb_000032_620 Hb_007416_200 Hb_007416_200 Hb_000684_300--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_000684_300--Hb_000093_130 Hb_001473_190 Hb_001473_190 Hb_000684_300--Hb_001473_190 Hb_003813_200 Hb_003813_200 Hb_000684_300--Hb_003813_200 Hb_005333_020 Hb_005333_020 Hb_000684_300--Hb_005333_020 Hb_000116_570 Hb_000116_570 Hb_000684_300--Hb_000116_570 Hb_011457_110 Hb_011457_110 Hb_055773_010--Hb_011457_110 Hb_000614_080 Hb_000614_080 Hb_055773_010--Hb_000614_080 Hb_002843_050 Hb_002843_050 Hb_055773_010--Hb_002843_050 Hb_015401_020 Hb_015401_020 Hb_055773_010--Hb_015401_020 Hb_000076_290 Hb_000076_290 Hb_055773_010--Hb_000076_290 Hb_024399_010 Hb_024399_010 Hb_055773_010--Hb_024399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.5027 14.4488 1.20975 4.42791 13.2547 7.02208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6541 11.3066 5.62746 4.68706 3.53363

CAGE analysis