Hb_000139_230

Information

Type transcription factor
Description TF Family: SNF2
Location Contig139: 251369-260455
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14930g
description POPTRDRAFT_766324; homeotic gene regulator family protein
nr
ID XP_012069573.1
description PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
swissprot
ID F4J9M5
description Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana GN=CHR12 PE=2 SV=1
trembl
ID A0A067KVH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02140 PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable atp-dependent dna helicase chr12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10635: 251443-260498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_230 0.0 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
2 Hb_001021_220 0.0784891678 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
3 Hb_006787_060 0.0940257645 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
4 Hb_029904_020 0.096464857 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
5 Hb_000935_090 0.0970073647 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
6 Hb_001377_110 0.0976718566 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
7 Hb_000879_160 0.0978583898 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
8 Hb_000786_040 0.1006426115 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
9 Hb_000849_020 0.1021232065 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
10 Hb_001163_120 0.1041371231 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_002000_060 0.1043284075 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
12 Hb_003529_130 0.104421582 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
13 Hb_002471_180 0.1048818523 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_003029_130 0.1068905427 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
15 Hb_000922_140 0.1078773261 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
16 Hb_147505_010 0.10966996 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
17 Hb_010925_020 0.1101359597 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
18 Hb_000035_410 0.1112190778 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
19 Hb_000270_160 0.1126250238 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
20 Hb_000376_060 0.1139479864 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_230 Hb_000139_230 Hb_001021_220 Hb_001021_220 Hb_000139_230--Hb_001021_220 Hb_006787_060 Hb_006787_060 Hb_000139_230--Hb_006787_060 Hb_029904_020 Hb_029904_020 Hb_000139_230--Hb_029904_020 Hb_000935_090 Hb_000935_090 Hb_000139_230--Hb_000935_090 Hb_001377_110 Hb_001377_110 Hb_000139_230--Hb_001377_110 Hb_000879_160 Hb_000879_160 Hb_000139_230--Hb_000879_160 Hb_001021_220--Hb_001377_110 Hb_001789_190 Hb_001789_190 Hb_001021_220--Hb_001789_190 Hb_001021_220--Hb_029904_020 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110 Hb_001231_030 Hb_001231_030 Hb_006787_060--Hb_001231_030 Hb_004629_010 Hb_004629_010 Hb_006787_060--Hb_004629_010 Hb_032920_130 Hb_032920_130 Hb_006787_060--Hb_032920_130 Hb_133047_010 Hb_133047_010 Hb_006787_060--Hb_133047_010 Hb_006787_060--Hb_000935_090 Hb_002022_070 Hb_002022_070 Hb_006787_060--Hb_002022_070 Hb_000208_260 Hb_000208_260 Hb_029904_020--Hb_000208_260 Hb_012215_010 Hb_012215_010 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_001948_130 Hb_001948_130 Hb_029904_020--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090 Hb_001178_150 Hb_001178_150 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_098209_010 Hb_098209_010 Hb_001377_110--Hb_098209_010 Hb_009771_110 Hb_009771_110 Hb_001377_110--Hb_009771_110 Hb_000457_230 Hb_000457_230 Hb_001377_110--Hb_000457_230 Hb_007929_080 Hb_007929_080 Hb_001377_110--Hb_007929_080 Hb_003186_020 Hb_003186_020 Hb_001377_110--Hb_003186_020 Hb_000879_160--Hb_000935_090 Hb_000046_070 Hb_000046_070 Hb_000879_160--Hb_000046_070 Hb_000879_160--Hb_000796_190 Hb_000879_160--Hb_004429_160 Hb_000879_160--Hb_000025_650 Hb_007558_120 Hb_007558_120 Hb_000879_160--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.608 18.3238 18.1221 13.7235 19.4389 27.5895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.44935 3.71314 7.02056 11.2015 19.6108

CAGE analysis