Hb_000139_310

Information

Type -
Description -
Location Contig139: 340590-344288
Sequence    

Annotation

kegg
ID vvi:100263079
description glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic
nr
ID XP_012069562.1
description PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
swissprot
ID P55229
description Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3
trembl
ID A0A067KYT7
description Glucose-1-phosphate adenylyltransferase OS=Jatropha curcas GN=JCGZ_02131 PE=3 SV=1
Gene Ontology
ID GO:0008878
description glucose-1-phosphate adenylyltransferase large subunit chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10654: 340681-344234
cDNA
(Sanger)
(ID:Location)		 033_I14r.ab1: 338279-339764

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_310 0.0 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
2 Hb_001416_130 0.0328017908 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006570_030 0.0330031002 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
4 Hb_000589_340 0.0361078419 - - unknown [Populus trichocarpa x Populus deltoides]
5 Hb_001028_040 0.0414200706 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
6 Hb_002368_060 0.0444322366 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001292_030 0.0563800947 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
8 Hb_001322_120 0.0574917066 - - nutrient reservoir, putative [Ricinus communis]
9 Hb_002785_030 0.0577092456 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
10 Hb_001892_080 0.058848212 - - Clavata3/esr-related 16, putative [Theobroma cacao]
11 Hb_029079_010 0.0650829917 - - receptor-kinase, putative [Ricinus communis]
12 Hb_002871_180 0.065915021 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
13 Hb_000531_100 0.0673615828 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
14 Hb_000101_330 0.0692226082 - - -
15 Hb_007477_060 0.069738122 - - unknown [Medicago truncatula]
16 Hb_002529_120 0.0706310119 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
17 Hb_001766_160 0.0708203404 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
18 Hb_000545_180 0.0716549802 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
19 Hb_001958_060 0.0719161256 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
20 Hb_117807_020 0.0729744549 - - methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000139_310 Hb_000139_310 Hb_001416_130 Hb_001416_130 Hb_000139_310--Hb_001416_130 Hb_006570_030 Hb_006570_030 Hb_000139_310--Hb_006570_030 Hb_000589_340 Hb_000589_340 Hb_000139_310--Hb_000589_340 Hb_001028_040 Hb_001028_040 Hb_000139_310--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000139_310--Hb_002368_060 Hb_001292_030 Hb_001292_030 Hb_000139_310--Hb_001292_030 Hb_001416_130--Hb_000589_340 Hb_001416_130--Hb_006570_030 Hb_029079_010 Hb_029079_010 Hb_001416_130--Hb_029079_010 Hb_001892_080 Hb_001892_080 Hb_001416_130--Hb_001892_080 Hb_000545_180 Hb_000545_180 Hb_001416_130--Hb_000545_180 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_001322_120 Hb_001322_120 Hb_006570_030--Hb_001322_120 Hb_006570_030--Hb_001292_030 Hb_000450_050 Hb_000450_050 Hb_000589_340--Hb_000450_050 Hb_000589_340--Hb_006570_030 Hb_005276_080 Hb_005276_080 Hb_000589_340--Hb_005276_080 Hb_002785_040 Hb_002785_040 Hb_000589_340--Hb_002785_040 Hb_001028_040--Hb_002368_060 Hb_002785_030 Hb_002785_030 Hb_001028_040--Hb_002785_030 Hb_001028_040--Hb_001322_120 Hb_001028_040--Hb_001292_030 Hb_002368_060--Hb_002785_030 Hb_002368_060--Hb_001322_120 Hb_002368_060--Hb_001292_030 Hb_001006_040 Hb_001006_040 Hb_001292_030--Hb_001006_040 Hb_001292_030--Hb_002785_030 Hb_001292_030--Hb_001322_120 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.73675 72.7362 22.7549 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.178693 0.0401699 0 0.0239991 129.394

CAGE analysis