Hb_000139_350

Information

Type -
Description -
Location Contig139: 376032-377435
Sequence    

Annotation

kegg
ID tcc:TCM_012595
description AtGCP3 interacting protein 1
nr
ID XP_007036711.1
description AtGCP3 interacting protein 1 [Theobroma cacao]
swissprot
ID Q9M0N8
description Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1
trembl
ID A0A061FWI8
description AtGCP3 interacting protein 1 OS=Theobroma cacao GN=TCM_012595 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10664: 376293-377331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_350 0.0 - - AtGCP3 interacting protein 1 [Theobroma cacao]
2 Hb_135545_010 0.0710787016 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_000141_040 0.0976110648 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
4 Hb_007575_060 0.1002896697 - - hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
5 Hb_012762_050 0.1028729694 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
6 Hb_001512_070 0.103900841 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
7 Hb_002868_010 0.1041417851 - - 60S ribosomal protein L30, putative [Ricinus communis]
8 Hb_000395_290 0.1042923519 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
9 Hb_000042_300 0.1070872404 - - -
10 Hb_003939_080 0.1081587459 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008112_040 0.1085848374 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
12 Hb_000473_040 0.1103227993 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
13 Hb_017469_020 0.1116685995 - - -
14 Hb_001776_090 0.1117646675 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
15 Hb_000640_080 0.1152210706 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
16 Hb_002150_080 0.1160506912 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
17 Hb_002007_060 0.1163616526 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
18 Hb_003078_040 0.1177276515 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
19 Hb_002399_010 0.1214917779 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003929_260 0.1228718856 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000139_350 Hb_000139_350 Hb_135545_010 Hb_135545_010 Hb_000139_350--Hb_135545_010 Hb_000141_040 Hb_000141_040 Hb_000139_350--Hb_000141_040 Hb_007575_060 Hb_007575_060 Hb_000139_350--Hb_007575_060 Hb_012762_050 Hb_012762_050 Hb_000139_350--Hb_012762_050 Hb_001512_070 Hb_001512_070 Hb_000139_350--Hb_001512_070 Hb_002868_010 Hb_002868_010 Hb_000139_350--Hb_002868_010 Hb_135545_010--Hb_012762_050 Hb_000473_040 Hb_000473_040 Hb_135545_010--Hb_000473_040 Hb_001301_160 Hb_001301_160 Hb_135545_010--Hb_001301_160 Hb_002007_060 Hb_002007_060 Hb_135545_010--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_135545_010--Hb_011571_020 Hb_145880_030 Hb_145880_030 Hb_000141_040--Hb_145880_030 Hb_000141_040--Hb_002007_060 Hb_000395_290 Hb_000395_290 Hb_000141_040--Hb_000395_290 Hb_003363_110 Hb_003363_110 Hb_000141_040--Hb_003363_110 Hb_000866_270 Hb_000866_270 Hb_000141_040--Hb_000866_270 Hb_003078_040 Hb_003078_040 Hb_000141_040--Hb_003078_040 Hb_003929_260 Hb_003929_260 Hb_007575_060--Hb_003929_260 Hb_007575_060--Hb_135545_010 Hb_002150_080 Hb_002150_080 Hb_007575_060--Hb_002150_080 Hb_007426_180 Hb_007426_180 Hb_007575_060--Hb_007426_180 Hb_017469_020 Hb_017469_020 Hb_007575_060--Hb_017469_020 Hb_012762_050--Hb_000473_040 Hb_000221_220 Hb_000221_220 Hb_012762_050--Hb_000221_220 Hb_012762_050--Hb_001512_070 Hb_012762_050--Hb_002007_060 Hb_012762_050--Hb_011571_020 Hb_003939_080 Hb_003939_080 Hb_001512_070--Hb_003939_080 Hb_007101_150 Hb_007101_150 Hb_001512_070--Hb_007101_150 Hb_001828_090 Hb_001828_090 Hb_001512_070--Hb_001828_090 Hb_001512_070--Hb_002868_010 Hb_000684_090 Hb_000684_090 Hb_001512_070--Hb_000684_090 Hb_002868_010--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_002868_010--Hb_001946_210 Hb_002868_010--Hb_002007_060 Hb_000000_160 Hb_000000_160 Hb_002868_010--Hb_000000_160 Hb_011360_140 Hb_011360_140 Hb_002868_010--Hb_011360_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.6414 35.5029 28.2714 16.5824 40.4157 31.2671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9237 73.3786 35.7246 7.80211 4.9055

CAGE analysis