Hb_000139_400

Information

Type -
Description -
Location Contig139: 403115-409758
Sequence    

Annotation

kegg
ID rcu:RCOM_0913490
description hypothetical protein
nr
ID XP_002517181.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F6HDM2
description ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Vitis vinifera GN=VIT_05s0020g02800 PE=3 SV=1
trembl
ID B9RTW2
description ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Ricinus communis GN=RCOM_0913490 PE=3 SV=1
Gene Ontology
ID GO:0052855
description atp-dependent -nad h-hydrate dehydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10669: 402978-403789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_400 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009620_070 0.1646797184 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
3 Hb_000770_010 0.1769346641 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_007472_020 0.202757578 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
5 Hb_000936_090 0.2040905938 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Jatropha curcas]
6 Hb_000453_020 0.2059795988 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_021409_120 0.2069292816 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_007483_120 0.2086175653 - - 60S ribosomal protein L32A [Hevea brasiliensis]
9 Hb_002217_360 0.2140371765 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
10 Hb_000685_020 0.2146140767 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
11 Hb_004864_020 0.2158000315 - - Polyprotein, putative [Solanum demissum]
12 Hb_088080_020 0.220630253 - - -
13 Hb_003029_120 0.2215326649 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
14 Hb_012308_050 0.2222077782 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
15 Hb_029576_010 0.2245133091 - - PREDICTED: B-cell receptor-associated protein 31-like [Glycine max]
16 Hb_000181_230 0.2262263258 - - copper ion binding protein, putative [Ricinus communis]
17 Hb_002685_160 0.2294434788 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_006816_490 0.2324353429 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 21 [Jatropha curcas]
19 Hb_119066_010 0.2331918683 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
20 Hb_000164_150 0.2334038726 - - serine/threonine-specific protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000139_400 Hb_000139_400 Hb_009620_070 Hb_009620_070 Hb_000139_400--Hb_009620_070 Hb_000770_010 Hb_000770_010 Hb_000139_400--Hb_000770_010 Hb_007472_020 Hb_007472_020 Hb_000139_400--Hb_007472_020 Hb_000936_090 Hb_000936_090 Hb_000139_400--Hb_000936_090 Hb_000453_020 Hb_000453_020 Hb_000139_400--Hb_000453_020 Hb_021409_120 Hb_021409_120 Hb_000139_400--Hb_021409_120 Hb_000685_020 Hb_000685_020 Hb_009620_070--Hb_000685_020 Hb_009620_070--Hb_000453_020 Hb_002217_360 Hb_002217_360 Hb_009620_070--Hb_002217_360 Hb_002685_160 Hb_002685_160 Hb_009620_070--Hb_002685_160 Hb_003488_040 Hb_003488_040 Hb_009620_070--Hb_003488_040 Hb_004032_330 Hb_004032_330 Hb_000770_010--Hb_004032_330 Hb_005016_100 Hb_005016_100 Hb_000770_010--Hb_005016_100 Hb_000770_010--Hb_021409_120 Hb_006483_090 Hb_006483_090 Hb_000770_010--Hb_006483_090 Hb_004864_020 Hb_004864_020 Hb_000770_010--Hb_004864_020 Hb_000679_260 Hb_000679_260 Hb_000770_010--Hb_000679_260 Hb_007472_020--Hb_004032_330 Hb_000101_300 Hb_000101_300 Hb_007472_020--Hb_000101_300 Hb_007472_020--Hb_000770_010 Hb_004604_030 Hb_004604_030 Hb_007472_020--Hb_004604_030 Hb_000703_180 Hb_000703_180 Hb_007472_020--Hb_000703_180 Hb_007472_020--Hb_021409_120 Hb_000737_010 Hb_000737_010 Hb_000936_090--Hb_000737_010 Hb_000438_010 Hb_000438_010 Hb_000936_090--Hb_000438_010 Hb_000936_090--Hb_004864_020 Hb_001522_040 Hb_001522_040 Hb_000936_090--Hb_001522_040 Hb_002411_160 Hb_002411_160 Hb_000936_090--Hb_002411_160 Hb_000803_120 Hb_000803_120 Hb_000936_090--Hb_000803_120 Hb_000482_120 Hb_000482_120 Hb_000453_020--Hb_000482_120 Hb_003029_120 Hb_003029_120 Hb_000453_020--Hb_003029_120 Hb_010337_040 Hb_010337_040 Hb_000453_020--Hb_010337_040 Hb_000453_020--Hb_003488_040 Hb_002184_080 Hb_002184_080 Hb_000453_020--Hb_002184_080 Hb_012539_100 Hb_012539_100 Hb_000453_020--Hb_012539_100 Hb_021409_120--Hb_006483_090 Hb_021409_120--Hb_004032_330 Hb_000270_250 Hb_000270_250 Hb_021409_120--Hb_000270_250 Hb_000500_230 Hb_000500_230 Hb_021409_120--Hb_000500_230 Hb_000007_440 Hb_000007_440 Hb_021409_120--Hb_000007_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0892804 0.142715 0.160029 0 0.0783308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0778406 0.0974162

CAGE analysis