Hb_000139_410

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig139: 410714-415688
Sequence    

Annotation

kegg
ID pop:POPTR_0010s03730g
description hypothetical protein
nr
ID XP_006378139.1
description hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
swissprot
ID Q8L4B2
description Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1
trembl
ID U5G109
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s03730g PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit c-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10670: 410466-415714 , PASA_asmbl_10671: 414567-415042 , PASA_asmbl_10672: 415072-415436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_410 0.0 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
2 Hb_010381_070 0.0467927262 - - PREDICTED: protein STU1-like [Jatropha curcas]
3 Hb_005000_210 0.0613553404 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
4 Hb_001584_330 0.0682639537 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
5 Hb_004109_200 0.0684255417 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
6 Hb_001623_420 0.0772567575 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_002150_080 0.0779029734 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
8 Hb_033153_050 0.0806494542 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
9 Hb_021254_030 0.0826137308 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
10 Hb_002685_010 0.0833452293 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
11 Hb_002375_020 0.084809706 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
12 Hb_002685_140 0.0857965087 - - PREDICTED: membrin-11 [Jatropha curcas]
13 Hb_005306_110 0.0876313747 - - casein kinase, putative [Ricinus communis]
14 Hb_001377_290 0.0883013518 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
15 Hb_000000_080 0.0889440402 - - lipoate-protein ligase B, putative [Ricinus communis]
16 Hb_126643_020 0.0890221351 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
17 Hb_000866_270 0.0900746919 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
18 Hb_023226_040 0.0904850482 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
19 Hb_000754_060 0.0912581849 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
20 Hb_001138_050 0.0918513134 - - hypothetical protein JCGZ_15696 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_410 Hb_000139_410 Hb_010381_070 Hb_010381_070 Hb_000139_410--Hb_010381_070 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_001584_330 Hb_001584_330 Hb_000139_410--Hb_001584_330 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080 Hb_002375_020 Hb_002375_020 Hb_010381_070--Hb_002375_020 Hb_010381_070--Hb_004109_200 Hb_010381_070--Hb_001623_420 Hb_000754_060 Hb_000754_060 Hb_010381_070--Hb_000754_060 Hb_010381_070--Hb_001584_330 Hb_002188_130 Hb_002188_130 Hb_005000_210--Hb_002188_130 Hb_000866_270 Hb_000866_270 Hb_005000_210--Hb_000866_270 Hb_000367_200 Hb_000367_200 Hb_005000_210--Hb_000367_200 Hb_023226_040 Hb_023226_040 Hb_005000_210--Hb_023226_040 Hb_003078_040 Hb_003078_040 Hb_005000_210--Hb_003078_040 Hb_001584_330--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_000120_950 Hb_000120_950 Hb_001584_330--Hb_000120_950 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_000483_350 Hb_000483_350 Hb_004109_200--Hb_000483_350 Hb_004109_200--Hb_002375_020 Hb_004109_200--Hb_005306_110 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_000621_080 Hb_000621_080 Hb_002150_080--Hb_000621_080 Hb_002495_070 Hb_002495_070 Hb_002150_080--Hb_002495_070 Hb_002150_080--Hb_010381_070 Hb_002085_110 Hb_002085_110 Hb_002150_080--Hb_002085_110 Hb_002685_170 Hb_002685_170 Hb_002150_080--Hb_002685_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
213.107 82.8341 51.8305 52.1856 115.89 118.727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
158.531 135.784 140.986 58.6268 22.8849

CAGE analysis