Hb_000139_460

Information

Type -
Description -
Location Contig139: 469717-472420
Sequence    

Annotation

kegg
ID rcu:RCOM_0912820
description basic 7S globulin 2 precursor small subunit, putative
nr
ID XP_002517164.1
description basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
swissprot
ID P13917
description Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2
trembl
ID B9RTU5
description Basic 7S globulin 2 small subunit, putative OS=Ricinus communis GN=RCOM_0912820 PE=4 SV=1
Gene Ontology
ID GO:0004190
description basic 7s globulin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10676: 470934-471331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_460 0.0 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
2 Hb_019299_020 0.073431817 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
3 Hb_001091_040 0.0983782572 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
4 Hb_003371_030 0.0991031776 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
5 Hb_002304_110 0.1038971404 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
6 Hb_006351_040 0.1146843056 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005144_150 0.1160508269 - - hypothetical protein VITISV_013572 [Vitis vinifera]
8 Hb_000352_360 0.1206886963 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
9 Hb_000220_020 0.121960749 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
10 Hb_001898_030 0.1223793351 - - protein kinase-coding resistance protein [Nicotiana repanda]
11 Hb_001006_300 0.1223912275 - - lipid binding protein, putative [Ricinus communis]
12 Hb_001257_140 0.1242606401 - - Gb:AAF02129.1, putative [Theobroma cacao]
13 Hb_000740_080 0.1253230867 - - -
14 Hb_003858_070 0.1319272402 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
15 Hb_066207_020 0.1325788988 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
16 Hb_017061_010 0.133039616 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
17 Hb_000813_020 0.1333033749 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
18 Hb_001296_010 0.1351184393 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001616_010 0.1367603716 - - hypothetical protein RCOM_1749890 [Ricinus communis]
20 Hb_039946_040 0.1379948573 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_000139_460 Hb_000139_460 Hb_019299_020 Hb_019299_020 Hb_000139_460--Hb_019299_020 Hb_001091_040 Hb_001091_040 Hb_000139_460--Hb_001091_040 Hb_003371_030 Hb_003371_030 Hb_000139_460--Hb_003371_030 Hb_002304_110 Hb_002304_110 Hb_000139_460--Hb_002304_110 Hb_006351_040 Hb_006351_040 Hb_000139_460--Hb_006351_040 Hb_005144_150 Hb_005144_150 Hb_000139_460--Hb_005144_150 Hb_000740_080 Hb_000740_080 Hb_019299_020--Hb_000740_080 Hb_019299_020--Hb_002304_110 Hb_001257_140 Hb_001257_140 Hb_019299_020--Hb_001257_140 Hb_010863_020 Hb_010863_020 Hb_019299_020--Hb_010863_020 Hb_000352_360 Hb_000352_360 Hb_019299_020--Hb_000352_360 Hb_001091_040--Hb_006351_040 Hb_039946_040 Hb_039946_040 Hb_001091_040--Hb_039946_040 Hb_004926_010 Hb_004926_010 Hb_001091_040--Hb_004926_010 Hb_004031_060 Hb_004031_060 Hb_001091_040--Hb_004031_060 Hb_002020_010 Hb_002020_010 Hb_001091_040--Hb_002020_010 Hb_001006_300 Hb_001006_300 Hb_003371_030--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_003371_030--Hb_003858_070 Hb_003371_030--Hb_019299_020 Hb_001296_010 Hb_001296_010 Hb_003371_030--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_003371_030--Hb_013399_060 Hb_001898_030 Hb_001898_030 Hb_002304_110--Hb_001898_030 Hb_000813_020 Hb_000813_020 Hb_002304_110--Hb_000813_020 Hb_034713_010 Hb_034713_010 Hb_002304_110--Hb_034713_010 Hb_009367_070 Hb_009367_070 Hb_002304_110--Hb_009367_070 Hb_000334_090 Hb_000334_090 Hb_002304_110--Hb_000334_090 Hb_017061_010 Hb_017061_010 Hb_002304_110--Hb_017061_010 Hb_006351_040--Hb_039946_040 Hb_000086_510 Hb_000086_510 Hb_006351_040--Hb_000086_510 Hb_006351_040--Hb_019299_020 Hb_004397_010 Hb_004397_010 Hb_006351_040--Hb_004397_010 Hb_005144_150--Hb_001257_140 Hb_005144_150--Hb_003858_070 Hb_005144_150--Hb_001006_300 Hb_005144_150--Hb_017061_010 Hb_003849_170 Hb_003849_170 Hb_005144_150--Hb_003849_170 Hb_005144_150--Hb_001898_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0146442 0.692156 1.97001 17.5997 0 0.029653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0667622 0.105044 0 1.63659 0.822031

CAGE analysis