Hb_000139_470

Information

Type -
Description -
Location Contig139: 473044-476863
Sequence    

Annotation

kegg
ID rcu:RCOM_0912790
description Dual specificity protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002517161.1
description Dual specificity protein phosphatase, putative [Ricinus communis]
swissprot
ID Q9ZR37
description Dual specificity protein phosphatase 1 OS=Arabidopsis thaliana GN=DSPTP1 PE=1 SV=1
trembl
ID B9RTU2
description Dual specificity protein phosphatase, putative OS=Ricinus communis GN=RCOM_0912790 PE=4 SV=1
Gene Ontology
ID GO:0008138
description dual specificity protein phosphatase 1 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10677: 473076-473929 , PASA_asmbl_10679: 473068-476950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_470 0.0 - - Dual specificity protein phosphatase, putative [Ricinus communis]
2 Hb_001728_040 0.1012404201 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
3 Hb_000847_060 0.1014251674 - - hypothetical protein [Jatropha curcas]
4 Hb_002301_160 0.1073204579 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
5 Hb_006538_090 0.1081431951 - - PREDICTED: IST1 homolog [Jatropha curcas]
6 Hb_000155_160 0.1174474284 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
7 Hb_002239_050 0.1186379515 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
8 Hb_015057_020 0.11875804 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
9 Hb_002045_070 0.1235322183 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
10 Hb_001221_570 0.1258615941 - - -
11 Hb_000327_380 0.1281321456 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
12 Hb_003376_180 0.1284766507 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
13 Hb_002060_010 0.1286439034 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
14 Hb_001301_110 0.129904274 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
15 Hb_000529_280 0.1309239296 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
16 Hb_000009_290 0.1319188743 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
17 Hb_004449_180 0.1333759531 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
18 Hb_168893_020 0.1336941799 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
19 Hb_000538_120 0.1338770249 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
20 Hb_007894_060 0.1345808268 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_470 Hb_000139_470 Hb_001728_040 Hb_001728_040 Hb_000139_470--Hb_001728_040 Hb_000847_060 Hb_000847_060 Hb_000139_470--Hb_000847_060 Hb_002301_160 Hb_002301_160 Hb_000139_470--Hb_002301_160 Hb_006538_090 Hb_006538_090 Hb_000139_470--Hb_006538_090 Hb_000155_160 Hb_000155_160 Hb_000139_470--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000139_470--Hb_002239_050 Hb_002303_020 Hb_002303_020 Hb_001728_040--Hb_002303_020 Hb_001728_040--Hb_000847_060 Hb_005653_070 Hb_005653_070 Hb_001728_040--Hb_005653_070 Hb_000723_230 Hb_000723_230 Hb_001728_040--Hb_000723_230 Hb_015057_020 Hb_015057_020 Hb_001728_040--Hb_015057_020 Hb_003376_180 Hb_003376_180 Hb_001728_040--Hb_003376_180 Hb_000847_060--Hb_000155_160 Hb_000847_060--Hb_002239_050 Hb_000419_020 Hb_000419_020 Hb_000847_060--Hb_000419_020 Hb_007894_060 Hb_007894_060 Hb_000847_060--Hb_007894_060 Hb_000161_130 Hb_000161_130 Hb_000847_060--Hb_000161_130 Hb_002045_070 Hb_002045_070 Hb_002301_160--Hb_002045_070 Hb_000110_120 Hb_000110_120 Hb_002301_160--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_002301_160--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_002301_160--Hb_004627_030 Hb_002042_150 Hb_002042_150 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_168893_020 Hb_168893_020 Hb_006538_090--Hb_168893_020 Hb_004005_020 Hb_004005_020 Hb_006538_090--Hb_004005_020 Hb_000538_120 Hb_000538_120 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_006538_090--Hb_015057_020 Hb_003058_120 Hb_003058_120 Hb_006538_090--Hb_003058_120 Hb_000155_160--Hb_000419_020 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_007747_050 Hb_007747_050 Hb_000155_160--Hb_007747_050 Hb_001863_430 Hb_001863_430 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_002239_050--Hb_000419_020 Hb_002239_050--Hb_000155_160 Hb_002631_180 Hb_002631_180 Hb_002239_050--Hb_002631_180 Hb_163256_020 Hb_163256_020 Hb_002239_050--Hb_163256_020 Hb_000465_070 Hb_000465_070 Hb_002239_050--Hb_000465_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68178 6.78788 7.37956 11.1151 2.09977 2.56982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2129 13.424 4.32089 7.64578 6.39594

CAGE analysis