Hb_000139_500

Information

Type -
Description -
Location Contig139: 513361-515690
Sequence    

Annotation

kegg
ID pmum:103322841
description putative uncharacterized protein DDB_G0286901
nr
ID XP_008223004.1
description PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
swissprot
ID -
description -
trembl
ID A0A067KV62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02104 PE=4 SV=1
Gene Ontology
ID GO:0046872
description neurogenic protein mastermind

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10680: 513198-515652
cDNA
(Sanger)
(ID:Location)		 048_A05.ab1: 514958-515652

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_500 0.0 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
2 Hb_000318_060 0.0539087616 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000393_030 0.0860877765 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_003913_060 0.0975520577 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003160_050 0.1070561081 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_003398_090 0.1122927109 - - PREDICTED: expansin-A4 [Jatropha curcas]
7 Hb_008066_060 0.1142424624 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
8 Hb_118707_020 0.1198298671 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007313_010 0.1199836031 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
10 Hb_003768_100 0.120925 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
11 Hb_002333_010 0.1271160115 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
12 Hb_000723_240 0.1275789587 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
13 Hb_000834_210 0.1302766096 - - unnamed protein product [Vitis vinifera]
14 Hb_001568_010 0.1305377814 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008727_030 0.130660621 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000163_010 0.1320524607 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
17 Hb_003097_200 0.1321581765 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001514_070 0.1348657855 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001545_270 0.1382938189 - - laccase, putative [Ricinus communis]
20 Hb_000112_050 0.138656643 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_500 Hb_000139_500 Hb_000318_060 Hb_000318_060 Hb_000139_500--Hb_000318_060 Hb_000393_030 Hb_000393_030 Hb_000139_500--Hb_000393_030 Hb_003913_060 Hb_003913_060 Hb_000139_500--Hb_003913_060 Hb_003160_050 Hb_003160_050 Hb_000139_500--Hb_003160_050 Hb_003398_090 Hb_003398_090 Hb_000139_500--Hb_003398_090 Hb_008066_060 Hb_008066_060 Hb_000139_500--Hb_008066_060 Hb_000318_060--Hb_003913_060 Hb_000318_060--Hb_000393_030 Hb_002333_010 Hb_002333_010 Hb_000318_060--Hb_002333_010 Hb_001568_010 Hb_001568_010 Hb_000318_060--Hb_001568_010 Hb_008727_030 Hb_008727_030 Hb_000318_060--Hb_008727_030 Hb_001514_070 Hb_001514_070 Hb_000393_030--Hb_001514_070 Hb_000393_030--Hb_002333_010 Hb_002870_010 Hb_002870_010 Hb_000393_030--Hb_002870_010 Hb_000393_030--Hb_003398_090 Hb_000163_010 Hb_000163_010 Hb_003913_060--Hb_000163_010 Hb_003913_060--Hb_003398_090 Hb_015978_010 Hb_015978_010 Hb_003913_060--Hb_015978_010 Hb_011849_020 Hb_011849_020 Hb_003913_060--Hb_011849_020 Hb_000723_240 Hb_000723_240 Hb_003160_050--Hb_000723_240 Hb_000834_210 Hb_000834_210 Hb_003160_050--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_003160_050--Hb_007313_010 Hb_003768_100 Hb_003768_100 Hb_003160_050--Hb_003768_100 Hb_002003_010 Hb_002003_010 Hb_003160_050--Hb_002003_010 Hb_001430_090 Hb_001430_090 Hb_003398_090--Hb_001430_090 Hb_003398_090--Hb_015978_010 Hb_003398_090--Hb_000163_010 Hb_000653_010 Hb_000653_010 Hb_008066_060--Hb_000653_010 Hb_008066_060--Hb_000723_240 Hb_000836_480 Hb_000836_480 Hb_008066_060--Hb_000836_480 Hb_001545_270 Hb_001545_270 Hb_008066_060--Hb_001545_270 Hb_008418_010 Hb_008418_010 Hb_008066_060--Hb_008418_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.42437 9.15106 16.5652 55.2803 0.132438 0.156002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224068 0 0 100.191 19.4903

CAGE analysis