Hb_000139_510

Information

Type -
Description -
Location Contig139: 518963-528708
Sequence    

Annotation

kegg
ID rcu:RCOM_0912640
description mahogunin, putative
nr
ID XP_012069524.1
description PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
swissprot
ID Q84ME1
description Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1
trembl
ID A0A067L6I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02103 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase lul4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10683: 525019-525278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_510 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
2 Hb_153257_010 0.107614761 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
3 Hb_002833_020 0.1208713807 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_000574_370 0.1252910023 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
5 Hb_004864_020 0.1278562212 - - Polyprotein, putative [Solanum demissum]
6 Hb_003092_050 0.1313490612 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
7 Hb_000085_380 0.1314452162 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001307_200 0.1325826732 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
9 Hb_001496_120 0.1344208438 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
10 Hb_012033_010 0.1353013677 - - PREDICTED: histone H1.2-like [Jatropha curcas]
11 Hb_002888_040 0.1375501049 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
12 Hb_003106_110 0.1382657799 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
13 Hb_000438_020 0.1420827395 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
14 Hb_004096_220 0.1424412207 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
15 Hb_000261_310 0.142653913 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
16 Hb_001268_300 0.1459715852 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000590_070 0.1463820294 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
18 Hb_042202_020 0.1474538992 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
19 Hb_000215_250 0.147735412 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
20 Hb_029748_020 0.147762493 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_510 Hb_000139_510 Hb_153257_010 Hb_153257_010 Hb_000139_510--Hb_153257_010 Hb_002833_020 Hb_002833_020 Hb_000139_510--Hb_002833_020 Hb_000574_370 Hb_000574_370 Hb_000139_510--Hb_000574_370 Hb_004864_020 Hb_004864_020 Hb_000139_510--Hb_004864_020 Hb_003092_050 Hb_003092_050 Hb_000139_510--Hb_003092_050 Hb_000085_380 Hb_000085_380 Hb_000139_510--Hb_000085_380 Hb_002093_050 Hb_002093_050 Hb_153257_010--Hb_002093_050 Hb_000823_010 Hb_000823_010 Hb_153257_010--Hb_000823_010 Hb_005485_070 Hb_005485_070 Hb_153257_010--Hb_005485_070 Hb_004096_220 Hb_004096_220 Hb_153257_010--Hb_004096_220 Hb_000261_310 Hb_000261_310 Hb_153257_010--Hb_000261_310 Hb_001008_110 Hb_001008_110 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_042202_020 Hb_042202_020 Hb_002833_020--Hb_042202_020 Hb_002603_010 Hb_002603_010 Hb_000574_370--Hb_002603_010 Hb_001268_300 Hb_001268_300 Hb_000574_370--Hb_001268_300 Hb_001488_280 Hb_001488_280 Hb_000574_370--Hb_001488_280 Hb_009193_060 Hb_009193_060 Hb_000574_370--Hb_009193_060 Hb_000574_370--Hb_002833_020 Hb_000714_120 Hb_000714_120 Hb_004864_020--Hb_000714_120 Hb_000418_150 Hb_000418_150 Hb_004864_020--Hb_000418_150 Hb_002099_060 Hb_002099_060 Hb_004864_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_004864_020--Hb_029748_020 Hb_000438_020 Hb_000438_020 Hb_004864_020--Hb_000438_020 Hb_001894_010 Hb_001894_010 Hb_003092_050--Hb_001894_010 Hb_000215_250 Hb_000215_250 Hb_003092_050--Hb_000215_250 Hb_000107_550 Hb_000107_550 Hb_003092_050--Hb_000107_550 Hb_005181_060 Hb_005181_060 Hb_003092_050--Hb_005181_060 Hb_013848_030 Hb_013848_030 Hb_003092_050--Hb_013848_030 Hb_000318_170 Hb_000318_170 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133889 1.3373 1.21223 1.70598 0.188533 0.463215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0765606 0.0301129 0.112308 2.36226 1.93704

CAGE analysis