Hb_000140_010

Information

Type -
Description -
Location Contig140: 7888-8971
Sequence    

Annotation

kegg
ID pop:POPTR_0403s00200g
description hypothetical protein
nr
ID XP_012083829.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14346 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_010 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_003531_110 0.0013392483 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_009225_030 0.0060529026 - - ring finger protein, putative [Ricinus communis]
4 Hb_104011_010 0.0066749576 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
5 Hb_185246_010 0.0085746105 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
6 Hb_121058_010 0.0086300909 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001456_010 0.0102941678 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_001377_140 0.0103735057 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
9 Hb_001504_250 0.0116904447 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_002254_020 0.0128447279 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
11 Hb_003792_010 0.014593026 - - conserved hypothetical protein [Ricinus communis]
12 Hb_045150_010 0.0170839556 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
13 Hb_003529_020 0.0199467192 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
14 Hb_102933_010 0.0200766136 - - Pectate lyase precursor, putative [Ricinus communis]
15 Hb_002490_070 0.0211295676 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
16 Hb_000272_060 0.0220222401 - - unnamed protein product [Vitis vinifera]
17 Hb_000012_360 0.0229443603 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
18 Hb_002759_210 0.0247757951 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
19 Hb_000152_690 0.0252463015 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
20 Hb_010543_010 0.0279973406 - - Phospholipid-transporting ATPase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000140_010 Hb_000140_010 Hb_003531_110 Hb_003531_110 Hb_000140_010--Hb_003531_110 Hb_009225_030 Hb_009225_030 Hb_000140_010--Hb_009225_030 Hb_104011_010 Hb_104011_010 Hb_000140_010--Hb_104011_010 Hb_185246_010 Hb_185246_010 Hb_000140_010--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_000140_010--Hb_121058_010 Hb_001456_010 Hb_001456_010 Hb_000140_010--Hb_001456_010 Hb_003531_110--Hb_009225_030 Hb_003531_110--Hb_104011_010 Hb_001377_140 Hb_001377_140 Hb_003531_110--Hb_001377_140 Hb_003531_110--Hb_185246_010 Hb_003531_110--Hb_121058_010 Hb_009225_030--Hb_104011_010 Hb_009225_030--Hb_185246_010 Hb_009225_030--Hb_121058_010 Hb_009225_030--Hb_001456_010 Hb_001504_250 Hb_001504_250 Hb_009225_030--Hb_001504_250 Hb_104011_010--Hb_185246_010 Hb_104011_010--Hb_121058_010 Hb_104011_010--Hb_001456_010 Hb_104011_010--Hb_001504_250 Hb_185246_010--Hb_121058_010 Hb_185246_010--Hb_001456_010 Hb_185246_010--Hb_001504_250 Hb_045150_010 Hb_045150_010 Hb_185246_010--Hb_045150_010 Hb_121058_010--Hb_001456_010 Hb_121058_010--Hb_001504_250 Hb_121058_010--Hb_045150_010 Hb_001456_010--Hb_001504_250 Hb_001456_010--Hb_045150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0186468 0.0187926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis