Hb_000140_020

Information

Type -
Description -
Location Contig140: 11667-11975
Sequence    

Annotation

kegg
ID mtr:MTR_2g083440
description Anthocyanidin 3-O-glucosyltransferase
nr
ID CDY28801.1
description BnaA02g09930D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078GTH5
description BnaA02g09930D protein OS=Brassica napus GN=BnaA02g09930D PE=4 SV=1
Gene Ontology
ID GO:0016758
description udp-glycosyltransferase 79b6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_020 0.0 - - BnaA02g09930D [Brassica napus]
2 Hb_002056_040 0.0004682782 - - arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_099335_030 0.0018509199 - - hypothetical protein M569_10107, partial [Genlisea aurea]
4 Hb_003598_060 0.0103620217 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
5 Hb_003020_320 0.0139569646 - - -
6 Hb_000877_010 0.0375718514 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
7 Hb_001068_060 0.040208516 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
8 Hb_000032_120 0.0404774645 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
9 Hb_099335_020 0.0421413957 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
10 Hb_061183_010 0.0474250821 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
11 Hb_001946_230 0.0549415732 - - -
12 Hb_000313_160 0.0571537326 - - BnaC02g20570D [Brassica napus]
13 Hb_000337_020 0.0635349268 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
14 Hb_001281_030 0.0654096906 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
15 Hb_003685_020 0.0739354148 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
16 Hb_124540_010 0.0754918774 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
17 Hb_034168_020 0.076899046 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
18 Hb_010904_020 0.0778381888 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
19 Hb_118410_020 0.0818960451 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
20 Hb_001543_010 0.0839479734 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000140_020 Hb_000140_020 Hb_002056_040 Hb_002056_040 Hb_000140_020--Hb_002056_040 Hb_099335_030 Hb_099335_030 Hb_000140_020--Hb_099335_030 Hb_003598_060 Hb_003598_060 Hb_000140_020--Hb_003598_060 Hb_003020_320 Hb_003020_320 Hb_000140_020--Hb_003020_320 Hb_000877_010 Hb_000877_010 Hb_000140_020--Hb_000877_010 Hb_001068_060 Hb_001068_060 Hb_000140_020--Hb_001068_060 Hb_002056_040--Hb_099335_030 Hb_002056_040--Hb_003598_060 Hb_002056_040--Hb_003020_320 Hb_002056_040--Hb_000877_010 Hb_002056_040--Hb_001068_060 Hb_099335_030--Hb_003020_320 Hb_099335_030--Hb_003598_060 Hb_099335_030--Hb_000877_010 Hb_099335_030--Hb_001068_060 Hb_003598_060--Hb_003020_320 Hb_003598_060--Hb_000877_010 Hb_003598_060--Hb_001068_060 Hb_061183_010 Hb_061183_010 Hb_003020_320--Hb_061183_010 Hb_001946_230 Hb_001946_230 Hb_003020_320--Hb_001946_230 Hb_000877_010--Hb_001068_060 Hb_000032_120 Hb_000032_120 Hb_000877_010--Hb_000032_120 Hb_099335_020 Hb_099335_020 Hb_000877_010--Hb_099335_020 Hb_001068_060--Hb_000032_120 Hb_001068_060--Hb_099335_020 Hb_124540_010 Hb_124540_010 Hb_001068_060--Hb_124540_010 Hb_010904_020 Hb_010904_020 Hb_001068_060--Hb_010904_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.36233 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.4299

CAGE analysis