Hb_000140_070

Information

Type -
Description -
Location Contig140: 60971-69692
Sequence    

Annotation

kegg
ID rcu:RCOM_1616500
description hypothetical protein
nr
ID XP_012083316.1
description PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14340 PE=4 SV=1
Gene Ontology
ID GO:0009987
description chorismate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10814: 60207-60355 , PASA_asmbl_10815: 60389-60811 , PASA_asmbl_10816: 60941-69404 , PASA_asmbl_10817: 60941-69404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_070 0.0 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
2 Hb_001059_100 0.0804926174 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
3 Hb_003373_040 0.0828189184 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
4 Hb_076693_020 0.0870049725 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
5 Hb_001220_030 0.0874444058 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
6 Hb_093084_070 0.0880711558 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
7 Hb_006847_040 0.0900876471 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
8 Hb_042038_020 0.0923535202 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
9 Hb_000336_140 0.0925512791 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002745_010 0.0947491638 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
11 Hb_124677_060 0.0959781873 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_000236_220 0.0969178869 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
13 Hb_000077_070 0.0970890433 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
14 Hb_000441_070 0.0986529622 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
15 Hb_000025_360 0.0986794194 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
16 Hb_004109_030 0.09929324 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001123_290 0.0999395298 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
18 Hb_001864_060 0.1004940339 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
19 Hb_027506_020 0.1005758853 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
20 Hb_000025_330 0.1007463887 - - hypothetical protein JCGZ_22759 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_070 Hb_000140_070 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_076693_020 Hb_076693_020 Hb_000140_070--Hb_076693_020 Hb_001220_030 Hb_001220_030 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_000025_360 Hb_000025_360 Hb_001059_100--Hb_000025_360 Hb_000865_080 Hb_000865_080 Hb_001059_100--Hb_000865_080 Hb_007676_100 Hb_007676_100 Hb_001059_100--Hb_007676_100 Hb_000959_040 Hb_000959_040 Hb_001059_100--Hb_000959_040 Hb_000291_190 Hb_000291_190 Hb_001059_100--Hb_000291_190 Hb_003373_040--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_003373_040--Hb_000236_220 Hb_004109_030 Hb_004109_030 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_076693_020--Hb_000025_360 Hb_076693_020--Hb_006847_040 Hb_002745_010 Hb_002745_010 Hb_001220_030--Hb_002745_010 Hb_001220_030--Hb_000291_190 Hb_124677_060 Hb_124677_060 Hb_001220_030--Hb_124677_060 Hb_001220_030--Hb_000865_080 Hb_000059_210 Hb_000059_210 Hb_001220_030--Hb_000059_210 Hb_093084_070--Hb_000236_220 Hb_000236_410 Hb_000236_410 Hb_093084_070--Hb_000236_410 Hb_001055_030 Hb_001055_030 Hb_093084_070--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_093084_070--Hb_000061_490 Hb_074969_010 Hb_074969_010 Hb_093084_070--Hb_074969_010 Hb_006847_040--Hb_045793_010 Hb_001021_170 Hb_001021_170 Hb_006847_040--Hb_001021_170 Hb_006847_040--Hb_000025_360 Hb_000174_220 Hb_000174_220 Hb_006847_040--Hb_000174_220 Hb_015807_070 Hb_015807_070 Hb_006847_040--Hb_015807_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.678 45.8195 7.9668 11.6672 23.0544 26.4262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.178 12.6417 17.5176 11.4052 7.22816

CAGE analysis